Information for 8-GCCCATTAGW (Motif 21)

A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G C G T A
Reverse Opposite:
C G A T A G T C A C G T C G T A G T C A A C G T C T A G A C T G A C T G A G T C
p-value:1e-8
log p-value:-1.955e+01
Information Content per bp:1.906
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif13.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets48.3 +/- 10.8bp
Average Position of motif in Background48.3 +/- 22.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GCCCATTAGW
-BCMATTAG-
 A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G C G T A
A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T

BSX/MA0876.1/Jaspar

Match Rank:2
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GCCCATTAGW
-CCAATTAA-
 A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G C G T A
A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A A C G T

BARX1/MA0875.1/Jaspar

Match Rank:3
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GCCCATTAGW
-GCAATTAG-
 A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G C G T A
A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T

VENTX/MA0724.1/Jaspar

Match Rank:4
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GCCCATTAGW
ACCGATTAG-
 A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G C G T A
C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GCCCATTAGW
NNCAATTANN
 A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G C G T A
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCCCATTAGW
GGCCATTAAC
 A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G C G T A
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

MSX2/MA0708.1/Jaspar

Match Rank:7
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCCCATTAGW
-CCAATTAA-
 A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G C G T A
A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T

Nobox/MA0125.1/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCCCATTAGW
ACCAATTA--
 A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G C G T A
T C G A A T G C G A T C G T C A G T C A A C G T C G A T C T G A A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:9
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCCCATTAGW
-CCAATTAG-
 A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G C G T A
A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T

GSX2/MA0893.1/Jaspar

Match Rank:10
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCCCATTAGW
ACTAATTAAA
 A C T G A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C T G C G T A
G T C A A T G C G A C T G T C A C G T A G C A T G C A T G C T A T C G A G T C A