Information for 12-CCGSGCTGTGTAM (Motif 19)

A G T C A G T C A C T G A T C G A C T G A G T C A C G T A C T G A C G T A C T G C A G T T C G A G T A C
Reverse Opposite:
A C T G A G C T G T C A A G T C C G T A A G T C C G T A A C T G A G T C A T G C A G T C A C T G A C T G
p-value:1e-9
log p-value:-2.167e+01
Information Content per bp:1.874
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets66.5 +/- 17.9bp
Average Position of motif in Background56.7 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:forward strand
Alignment:CCGSGCTGTGTAM
----GCTGTG---
 A G T C A G T C A C T G A T C G A C T G A G T C A C G T A C T G A C G T A C T G C A G T T C G A G T A C
A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CCGSGCTGTGTAM
CCCCCTGCTGTG---
 A C G T A C G T A G T C A G T C A C T G A T C G A C T G A G T C A C G T A C T G A C G T A C T G C A G T T C G A G T A C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCGSGCTGTGTAM
NNTCCTGCTGTGNNN
 A C G T A C G T A G T C A G T C A C T G A T C G A C T G A G T C A C G T A C T G A C G T A C T G C A G T T C G A G T A C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCGSGCTGTGTAM
GACCCCCCGCTGTG---
 A C G T A C G T A C G T A C G T A G T C A G T C A C T G A T C G A C T G A G T C A C G T A C T G A C G T A C T G C A G T T C G A G T A C
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCGSGCTGTGTAM
GCCGCGCAGTGCGT
 A C G T A G T C A G T C A C T G A T C G A C T G A G T C A C G T A C T G A C G T A C T G C A G T T C G A G T A C
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CCGSGCTGTGTAM
GGCCYCCTGCTGDGH--
 A C G T A C G T A C G T A C G T A G T C A G T C A C T G A T C G A C T G A G T C A C G T A C T G A C G T A C T G C A G T T C G A G T A C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCGSGCTGTGTAM
-CCTGCTGAGH--
 A G T C A G T C A C T G A T C G A C T G A G T C A C G T A C T G A C G T A C T G C A G T T C G A G T A C
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCGSGCTGTGTAM
TCNCCTGCTGNGNNN
 A C G T A C G T A G T C A G T C A C T G A T C G A C T G A G T C A C G T A C T G A C G T A C T G C A G T T C G A G T A C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCGSGCTGTGTAM
TNTCCTGCTGTGNNG
 A C G T A C G T A G T C A G T C A C T G A T C G A C T G A G T C A C G T A C T G A C G T A C T G C A G T T C G A G T A C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

ZIC3/MA0697.1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CCGSGCTGTGTAM
GACCCCCCGCTGCGC--
 A C G T A C G T A C G T A C G T A G T C A G T C A C T G A T C G A C T G A G T C A C G T A C T G A C G T A C T G C A G T T C G A G T A C
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T A C G T