Information for 22-GAATTAGTTA (Motif 53)

A C T G C G T A C G T A A C G T A C G T C G T A A C T G A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A G T C A C G T C G T A C G T A A C G T A C G T A G T C
p-value:1e-2
log p-value:-6.331e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif2.50%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets16.0 +/- 0.0bp
Average Position of motif in Background57.9 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HMBOX1/MA0895.1/Jaspar

Match Rank:1
Score:0.77
Offset:2
Orientation:forward strand
Alignment:GAATTAGTTA--
--ACTAGTTAAC
 A C T G C G T A C G T A A C G T A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T
A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PH0149.1_Pou3f4/Jaspar

Match Rank:2
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GAATTAGTTA----
AATTAATTAATTAATTC
 A C G T A C G T A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C G T
C T G A T G C A G C A T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G C T A C T G A C A G T C G A T A G T C

PH0142.1_Pou1f1/Jaspar

Match Rank:3
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---GAATTAGTTA----
GATTAATTAATTAAGTC
 A C G T A C G T A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C G T
C T A G T C G A C G A T C A G T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G C T A C G T A C A T G C G A T A G T C

Lhx3/MA0135.1/Jaspar

Match Rank:4
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GAATTAGTTA---
AAATTAATTAATC
 A C T G C G T A C G T A A C G T A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A C G T
C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C

PH0146.1_Pou3f1/Jaspar

Match Rank:5
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---GAATTAGTTA----
AATTAATTAATTAATTC
 A C G T A C G T A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C G T
C T G A T G C A A G C T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A T C G A A C G T C G A T G T A C

PH0040.1_Hmbox1/Jaspar

Match Rank:6
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GAATTAGTTA-----
GAAAACTAGTTAACATC
 A C G T A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

PH0147.1_Pou3f2/Jaspar

Match Rank:7
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GAATTAGTTA-----
GATAATTAATTAGTTTG
 A C G T A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
T A C G C G A T C G A T C G T A G C T A G A C T A G C T G C T A C G T A C G A T A C G T G C T A C T A G A C G T C A G T G A C T C T A G

PH0028.1_En1/Jaspar

Match Rank:8
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----GAATTAGTTA--
GNATTAATTAGTTNNC
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T
A C T G G A T C T G C A G A C T G A C T C G T A C G T A A G C T A G C T C T G A C T A G A C G T A C G T A G T C A T C G A G T C

PH0136.1_Phox2b/Jaspar

Match Rank:9
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GAATTAGTTA-----
CGGAATTAATTAATAGG
 A C G T A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
T A G C T C A G A C T G G C T A T C G A G A C T G A C T T C G A C G T A G A C T A G C T C T G A C T G A A G C T C T G A A T C G A T C G

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:10
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GAATTAGTTA----
NNAATTAGTCACGGT
 A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C T G A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T