Information for 13-TCACGAAGGA (Motif 35)

A C G T A G T C C G T A A G T C A C T G C G T A C G T A A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C A C G T A C G T A G T C A C T G A C G T A C T G C G T A
p-value:1e-3
log p-value:-7.024e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif2.50%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets95.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TCACGAAGGA
-AACAAAGG-
 A C G T A G T C C G T A A G T C A C T G C G T A C G T A A C T G A C T G C G T A
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TCACGAAGGA--
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C T G C G T A C G T A A C T G A C T G C G T A A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

PB0161.1_Rxra_2/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TCACGAAGGA------
TCGCGAAGGTTGTACT
 A C G T A G T C C G T A A G T C A C T G C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TCACGAAGGA
---NGAAGC-
 A C G T A G T C C G T A A G T C A C T G C G T A C G T A A C T G A C T G C G T A
A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T

PAX1/MA0779.1/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TCACGAAGGA-----
CGTCACGCATGACTGCA
 A C G T A C G T A C G T A G T C C G T A A G T C A C T G C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TCACGAAGGA
TBGCACGCAA--
 A C G T A C G T A C G T A G T C C G T A A G T C A C T G C G T A C G T A A C T G A C T G C G T A
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T

PAX9/MA0781.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TCACGAAGGA-----
CGTCACGCATGACTGCA
 A C G T A C G T A C G T A G T C C G T A A G T C A C T G C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

Pax6/MA0069.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TCACGAAGGA---
TTCACGCATGAGTT
 A C G T A C G T A G T C C G T A A G T C A C T G C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

Mitf/MA0620.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TCACGAAGGA
GGTCACGTGG--
 A C G T A C G T A C G T A G T C C G T A A G T C A C T G C G T A C G T A A C T G A C T G C G T A
C T A G T C A G A C G T T G A C G T C A A G T C T C A G G C A T A C T G T C A G A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TCACGAAGGA
GCACGTACCC
 A C G T A G T C C G T A A G T C A C T G C G T A C G T A A C T G A C T G C G T A
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C