Information for 12-GCTAATTACT (Motif 34)

A C T G A G T C A C G T C G T A C G T A A C G T A C G T C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T C G T A C G T A A C G T A C G T C G T A A C T G A G T C
p-value:1e-3
log p-value:-7.024e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif2.50%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets85.0 +/- 0.0bp
Average Position of motif in Background56.9 +/- 9.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0081.1_Pdx1/Jaspar

Match Rank:1
Score:0.84
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATTACT--
NTGNGCTAATTACCNN
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C G T
G T C A G A C T A T C G C G T A C T A G A T G C G A C T T G C A G C T A C A G T A C G T C T G A T A G C G A T C A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:2
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:GCTAATTACT
NCTAATTA--
 A C T G A G T C A C G T C G T A C G T A A C G T A C G T C G T A A G T C A C G T
T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T A C G T

PH0045.1_Hoxa1/Jaspar

Match Rank:3
Score:0.83
Offset:-4
Orientation:forward strand
Alignment:----GCTAATTACT--
CTGAGCTAATTACCGT
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C G T
A G T C G A C T C T A G C T G A T C A G A T G C G A C T T G C A C G T A C G A T A C G T C T G A T G A C A G T C A C T G A G C T

PH0039.1_Mnx1/Jaspar

Match Rank:4
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATTACT--
NNNCACTAATTANTNN
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C G T
A T G C C T A G A T G C G A T C T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A T A C G A C G T T G C A T G A C

EMX2/MA0886.1/Jaspar

Match Rank:5
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:GCTAATTACT
NCTAATTANN
 A C T G A G T C A C G T C G T A C G T A A C G T A C G T C G T A A G T C A C G T
T A C G A G T C A C G T G T C A C G T A A C G T C A G T C T G A T A C G A G T C

LHX6/MA0658.1/Jaspar

Match Rank:6
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:GCTAATTACT
NCTAATTAGT
 A C T G A G T C A C G T C G T A C G T A A C G T A C G T C G T A A G T C A C G T
T C A G A G T C G A C T T C G A T C G A A C G T A G C T T C G A T C A G A G C T

VSX2/MA0726.1/Jaspar

Match Rank:7
Score:0.81
Offset:1
Orientation:forward strand
Alignment:GCTAATTACT
-CTAATTAG-
 A C T G A G T C A C G T C G T A C G T A A C G T A C G T C G T A A G T C A C G T
A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G A C G T

VAX2/MA0723.1/Jaspar

Match Rank:8
Score:0.81
Offset:1
Orientation:forward strand
Alignment:GCTAATTACT
-CTAATTAC-
 A C T G A G T C A C G T C G T A C G T A A C G T A C G T C G T A A G T C A C G T
A C G T A G T C G A C T G T C A G C T A C G A T C A G T C T G A A G T C A C G T

VSX1/MA0725.1/Jaspar

Match Rank:9
Score:0.80
Offset:1
Orientation:forward strand
Alignment:GCTAATTACT
-CTAATTAT-
 A C T G A G T C A C G T C G T A C G T A A C G T A C G T C G T A A G T C A C G T
A C G T G A T C G A C T G T C A T C G A G A C T C A G T C T G A A C G T A C G T

PH0031.1_Evx1/Jaspar

Match Rank:10
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATTACT---
NNNCACTAATTAGTNNT
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A C G T A A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T
A C T G G C A T A T G C T A G C T C G A A T G C G A C T G T C A G T C A A C G T A C G T C T G A T A C G A G C T C A G T A G T C C G A T