Information for 6-CCMTWSKCTAWGYRRT (Motif 10)

A G T C A G T C G T A C C G A T C G A T A T G C A C T G A G T C A C G T C G T A C G T A A C T G A G C T C T G A C T G A A C G T
Reverse Opposite:
C G T A A G C T A G C T C T G A A G T C C G A T A C G T T G C A C T A G G T A C A T C G G C T A C G T A A C T G A C T G C T A G
p-value:1e-7
log p-value:-1.757e+01
Information Content per bp:1.796
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif7.50%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets39.3 +/- 36.5bp
Average Position of motif in Background51.8 +/- 15.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3-1/MA0124.2/Jaspar

Match Rank:1
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:CCMTWSKCTAWGYRRT
-------TTAAGTGGT
 A G T C A G T C G T A C C G A T C G A T A T G C A C T G A G T C A C G T C G T A C G T A A C T G A G C T C T G A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

NKX3-2/MA0122.2/Jaspar

Match Rank:2
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:CCMTWSKCTAWGYRRT
-------TTAAGTGGN
 A G T C A G T C G T A C C G A T C G A T A T G C A C T G A G T C A C G T C G T A C G T A A C T G A G C T C T G A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

PH0004.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CCMTWSKCTAWGYRRT----
---NTNNTTAAGTGGTTANN
 A G T C A G T C G T A C C G A T C G A T A T G C A C T G A G T C A C G T C G T A C G T A A C T G A G C T C T G A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---CCMTWSKCTAWGYRRT
ANTCCTTTGTCTNNNN---
 A C G T A C G T A C G T A G T C A G T C G T A C C G A T C G A T A T G C A C T G A G T C A C G T C G T A C G T A A C T G A G C T C T G A C T G A A C G T
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---CCMTWSKCTAWGYRRT
NNNCCATTGTGTNAN----
 A C G T A C G T A C G T A G T C A G T C G T A C C G A T C G A T A T G C A C T G A G T C A C G T C G T A C G T A A C T G A G C T C T G A C T G A A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G A C G T A C G T A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:6
Score:0.49
Offset:-5
Orientation:reverse strand
Alignment:-----CCMTWSKCTAWGYRRT
NNGCACCTTTCTCC-------
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C G T A C C G A T C G A T A T G C A C T G A G T C A C G T C G T A C G T A A C T G A G C T C T G A C T G A A C G T
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-CCMTWSKCTAWGYRRT
NCCATTGTTY-------
 A C G T A G T C A G T C G T A C C G A T C G A T A T G C A C T G A G T C A C G T C G T A C G T A A C T G A G C T C T G A C T G A A C G T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:8
Score:0.48
Offset:7
Orientation:reverse strand
Alignment:CCMTWSKCTAWGYRRT-
-------TTAAGTGCTT
 A G T C A G T C G T A C C G A T C G A T A T G C A C T G A G T C A C G T C G T A C G T A A C T G A G C T C T G A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

PB0132.1_Hbp1_2/Jaspar

Match Rank:9
Score:0.48
Offset:-5
Orientation:forward strand
Alignment:-----CCMTWSKCTAWGYRRT
TGTTCCCATTGTGTACT----
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C G T A C C G A T C G A T A T G C A C T G A G T C A C G T C G T A C G T A A C T G A G C T C T G A C T G A A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.48
Offset:0
Orientation:forward strand
Alignment:CCMTWSKCTAWGYRRT
CCTTTGTT--------
 A G T C A G T C G T A C C G A T C G A T A T G C A C T G A G T C A C G T C G T A C G T A A C T G A G C T C T G A C T G A A C G T
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T