Information for 5-CCCTTTAAGG (Motif 15)

A G T C A T G C A G T C A G C T A C G T C G A T C G T A C T G A A C T G A T C G
Reverse Opposite:
A T G C A G T C A G C T A C G T G C T A C G T A C T G A C T A G A T C G T C A G
p-value:1e-6
log p-value:-1.438e+01
Information Content per bp:1.845
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif68.3
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets62.4 +/- 25.4bp
Average Position of motif in Background45.6 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CCCTTTAAGG--
CCTTTTATAGNC
 A G T C A T G C A G T C A G C T A C G T C G A T C G T A C T G A A C T G A T C G A C G T A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCCTTTAAGG
TNCCATATATGG
 A C G T A C G T A G T C A T G C A G T C A G C T A C G T C G A T C G T A C T G A A C T G A T C G
C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G

PB0184.1_Tbp_2/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCCTTTAAGG----
CCGATTTAAGCGACC
 A C G T A G T C A T G C A G T C A G C T A C G T C G A T C G T A C T G A A C T G A T C G A C G T A C G T A C G T A C G T
T G A C A T G C A T C G C G T A G A C T C G A T C G A T G T C A G C T A A T C G T A G C A C T G G C T A A C G T G T A C

PB0078.1_Srf_1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCCTTTAAGG--
TTCCATATATGGAA
 A C G T A C G T A G T C A T G C A G T C A G C T A C G T C G A T C G T A C T G A A C T G A T C G A C G T A C G T
G C A T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A G C A T C T A G C A T G G C A T G T C A

BARHL2/MA0635.1/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCCTTTAAGG
ANCGTTTANN-
 A C G T A G T C A T G C A G T C A G C T A C G T C G A T C G T A C T G A A C T G A T C G
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCCTTTAAGG
CCATATATGG
 A G T C A T G C A G T C A G C T A C G T C G A T C G T A C T G A A C T G A T C G
G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCCTTTAAGG-
-CCTTTGAWGT
 A G T C A T G C A G T C A G C T A C G T C G A T C G T A C T G A A C T G A T C G A C G T
A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCCTTTAAGG
NNCAATTANN-
 A C G T A G T C A T G C A G T C A G C T A C G T C G A T C G T A C T G A A C T G A T C G
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T

SRF/MA0083.3/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCCTTTAAGG---
TGACCATATATGGTCA
 A C G T A C G T A C G T A G T C A T G C A G T C A G C T A C G T C G A T C G T A C T G A A C T G A T C G A C G T A C G T A C G T
G C A T A C T G G T C A A T G C A G T C C G T A C G A T C T G A A C G T C G T A G C A T T A C G C T A G C A G T T G A C C G T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCCTTTAAGG--
DGWTTTATGRCN
 A G T C A T G C A G T C A G C T A C G T C G A T C G T A C T G A A C T G A T C G A C G T A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C