Information for 5-GYCTGTCCCCTGTTCT (Motif 13)

A T C G A G C T A G T C A C G T A C T G A C G T G T A C A G T C A G T C A G T C A C G T A C T G G A C T A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A C G T A A G T C C G T A A C T G A C T G A C T G A C T G C G T A A G T C C G T A A C T G C T A G A T G C
p-value:1e-8
log p-value:-1.843e+01
Information Content per bp:1.900
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.8 +/- 31.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GYCTGTCCCCTGTTCT
--CTGTTCCTGG----
 A T C G A G C T A G T C A C G T A C T G A C G T G T A C A G T C A G T C A G T C A C G T A C T G G A C T A C G T A G T C A C G T
A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GYCTGTCCCCTGTTCT
CTGTCTGTCACCT-----
 A C G T A C G T A T C G A G C T A G T C A C G T A C T G A C G T G T A C A G T C A G T C A G T C A C G T A C T G G A C T A C G T A G T C A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GYCTGTCCCCTGTTCT
NNNNTTGACCCCTNNNN-
 A C G T A C G T A T C G A G C T A G T C A C G T A C T G A C G T G T A C A G T C A G T C A G T C A C G T A C T G G A C T A C G T A G T C A C G T
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GYCTGTCCCCTGTTCT
TGTCTGDCACCT-----
 A C G T A T C G A G C T A G T C A C G T A C T G A C G T G T A C A G T C A G T C A G T C A C G T A C T G G A C T A C G T A G T C A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

PB0047.1_Myf6_1/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GYCTGTCCCCTGTTCT--
--CNGACACCTGTTCNNN
 A T C G A G C T A G T C A C G T A C T G A C G T G T A C A G T C A G T C A G T C A C G T A C T G G A C T A C G T A G T C A C G T A C G T A C G T
A C G T A C G T T G A C C T A G T C A G T G C A A G T C C T G A T G A C A T G C C G A T C T A G A G C T A G C T T A G C G A C T A G C T A G T C

MZF1/MA0056.1/Jaspar

Match Rank:6
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GYCTGTCCCCTGTTCT
-----TCCCCA-----
 A T C G A G C T A G T C A C G T A C T G A C G T G T A C A G T C A G T C A G T C A C G T A C T G G A C T A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A A C G T A C G T A C G T A C G T A C G T

REST/MA0138.2/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GYCTGTCCCCTGTTCT---
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A T C G A G C T A G T C A C G T A C T G A C G T G T A C A G T C A G T C A G T C A C G T A C T G G A C T A C G T A G T C A C G T A C G T A C G T A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GYCTGTCCCCTGTTCT-
---TGACCTTTGCCCTA
 A T C G A G C T A G T C A C G T A C T G A C G T G T A C A G T C A G T C A G T C A C G T A C T G G A C T A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GYCTGTCCCCTGTTCT---
---TGGACTTTGNNCTNTG
 A T C G A G C T A G T C A C G T A C T G A C G T G T A C A G T C A G T C A G T C A C G T A C T G G A C T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GYCTGTCCCCTGTTCT--
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T A T C G A G C T A G T C A C G T A C T G A C G T G T A C A G T C A G T C A G T C A C G T A C T G G A C T A C G T A G T C A C G T A C G T A C G T
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A