Information for 5-GCTGCAGAGCCCC (Motif 8)

A T C G A T G C G C A T A T C G A G T C C T G A A C T G T C G A C T A G G A T C A G T C T A G C G A T C
Reverse Opposite:
C T A G A T C G T A C G C T A G G A T C A G C T A G T C A G C T A C T G A T G C C G T A A T C G T A G C
p-value:1e-11
log p-value:-2.615e+01
Information Content per bp:1.719
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif3.71%
Number of Background Sequences with motif406.1
Percentage of Background Sequences with motif0.84%
Average Position of motif in Targets55.9 +/- 24.1bp
Average Position of motif in Background47.5 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GCTGCAGAGCCCC
----CGGAGC---
 A T C G A T G C G C A T A T C G A G T C C T G A A C T G T C G A C T A G G A T C A G T C T A G C G A T C
A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GCTGCAGAGCCCC-
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T A T C G A T G C G C A T A T C G A G T C C T G A A C T G T C G A C T A G G A T C A G T C T A G C G A T C A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

Sp1(Zf)/Promoter/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCTGCAGAGCCCC
GGGGGCGGGGCC--
 A C G T A T C G A T G C G C A T A T C G A G T C C T G A A C T G T C G A C T A G G A T C A G T C T A G C G A T C
T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCTGCAGAGCCCC---
NNNGGGGCGCCCCCNN
 A T C G A T G C G C A T A T C G A G T C C T G A A C T G T C G A C T A G G A T C A G T C T A G C G A T C A C G T A C G T A C G T
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:5
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GCTGCAGAGCCCC---
------AAGACCCYYN
 A T C G A T G C G C A T A T C G A G T C C T G A A C T G T C G A C T A G G A T C A G T C T A G C G A T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T G C A A C T G G T C A A G T C A G T C A G T C A G T C A G C T T G A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GCTGCAGAGCCCC
GGCCYCCTGCTGDGH---
 A C G T A C G T A C G T A C G T A C G T A T C G A T G C G C A T A T C G A G T C C T G A A C T G T C G A C T A G G A T C A G T C T A G C G A T C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCTGCAGAGCCCC
CCTGCTGAGH---
 A T C G A T G C G C A T A T C G A G T C C T G A A C T G T C G A C T A G G A T C A G T C T A G C G A T C
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GCTGCAGAGCCCC
CCCCCTGCTGTG----
 A C G T A C G T A C G T A T C G A T G C G C A T A T C G A G T C C T G A A C T G T C G A C T A G G A T C A G T C T A G C G A T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

PB0025.1_Glis2_1/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GCTGCAGAGCCCC-----
--TATCGACCCCCCACAG
 A T C G A T G C G C A T A T C G A G T C C T G A A C T G T C G A C T A G G A T C A G T C T A G C G A T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T G C T A G C A T T A G C A C T G T G C A A G T C A G T C G A T C G A T C G A T C G A T C T G C A A G T C C T G A C A T G

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GCTGCAGAGCCCC
GGCTCYAKCAYC--
 A C G T A T C G A T G C G C A T A T C G A G T C C T G A A C T G T C G A C T A G G A T C A G T C T A G C G A T C
C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C A C G T A C G T