Information for 7-CTGCCAGACA (Motif 10)

G A T C C G A T T A C G T G A C T G A C C G T A T C A G C G T A T A G C G T C A
Reverse Opposite:
A C G T A T C G G C A T A G T C G C A T A C T G A C T G A T G C G C T A C T A G
p-value:1e-9
log p-value:-2.293e+01
Information Content per bp:1.653
Number of Target Sequences with motif64.0
Percentage of Target Sequences with motif7.19%
Number of Background Sequences with motif1408.0
Percentage of Background Sequences with motif2.93%
Average Position of motif in Targets49.6 +/- 26.2bp
Average Position of motif in Background50.0 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.81
Offset:3
Orientation:reverse strand
Alignment:CTGCCAGACA-
---CCAGACAG
 G A T C C G A T T A C G T G A C T G A C C G T A T C A G C G T A T A G C G T C A A C G T
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--CTGCCAGACA-----
CAAATCCAGACATCACA
 A C G T A C G T G A T C C G A T T A C G T G A C T G A C C G T A T C A G C G T A T A G C G T C A A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:CTGCCAGACA
ATGCCAGACN
 G A T C C G A T T A C G T G A C T G A C C G T A T C A G C G T A T A G C G T C A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:CTGCCAGACA---
---CCAGACRSVB
 G A T C C G A T T A C G T G A C T G A C C G T A T C A G C G T A T A G C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--CTGCCAGACA
AGGTGHCAGACA
 A C G T A C G T G A T C C G A T T A C G T G A C T G A C C G T A T C A G C G T A T A G C G T C A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--CTGCCAGACA-
AGGTGNCAGACAG
 A C G T A C G T G A T C C G A T T A C G T G A C T G A C C G T A T C A G C G T A T A G C G T C A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:CTGCCAGACA-
---BCAGACWA
 G A T C C G A T T A C G T G A C T G A C C G T A T C A G C G T A T A G C G T C A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAGACA-
SCTGTCAVTCAV
 A C G T G A T C C G A T T A C G T G A C T G A C C G T A T C A G C G T A T A G C G T C A A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTGCCAGACA
TTGCCAAG--
 G A T C C G A T T A C G T G A C T G A C C G T A T C A G C G T A T A G C G T C A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CTGCCAGACA
-TGCCAA---
 G A T C C G A T T A C G T G A C T G A C C G T A T C A G C G T A T A G C G T C A
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T