Information for 1-GGTCTGGTTT (Motif 1)

C A T G A T C G A G C T A G T C A C G T A C T G A C T G G C A T A G C T G A C T
Reverse Opposite:
C T G A T C G A C G T A T G A C A G T C C G T A A C T G C T G A T A G C G T A C
p-value:1e-30
log p-value:-7.013e+01
Information Content per bp:1.743
Number of Target Sequences with motif124.0
Percentage of Target Sequences with motif13.93%
Number of Background Sequences with motif2009.1
Percentage of Background Sequences with motif4.17%
Average Position of motif in Targets48.5 +/- 24.3bp
Average Position of motif in Background50.3 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.81
Offset:0
Orientation:forward strand
Alignment:GGTCTGGTTT
GGTCTGGCAT
 C A T G A T C G A G C T A G T C A C G T A C T G A C T G G C A T A G C T G A C T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.74
Offset:-5
Orientation:reverse strand
Alignment:-----GGTCTGGTTT--
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A C G T C A T G A T C G A G C T A G T C A C G T A C T G A C T G G C A T A G C T G A C T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GGTCTGGTTT
CTGTCTGG---
 A C G T C A T G A T C G A G C T A G T C A C G T A C T G A C T G G C A T A G C T G A C T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GGTCTGGTTT
VBSYGTCTGG---
 A C G T A C G T A C G T C A T G A T C G A G C T A G T C A C G T A C T G A C T G G C A T A G C T G A C T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GGTCTGGTTT------
-GYCTGGYYTNTGTCA
 C A T G A T C G A G C T A G T C A C G T A C T G A C T G G C A T A G C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGTCTGGTTT
TWGTCTGV---
 A C G T C A T G A T C G A G C T A G T C A C G T A C T G A C T G G C A T A G C T G A C T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GGTCTGGTTT
NNTGTGGTTT
 C A T G A T C G A G C T A G T C A C G T A C T G A C T G G C A T A G C T G A C T
A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GGTCTGGTTT
GCTGTGGTTT
 C A T G A T C G A G C T A G T C A C G T A C T G A C T G G C A T A G C T G A C T
A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T

RUNX1/MA0002.2/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGTCTGGTTT
GTCTGTGGTTT
 A C G T C A T G A T C G A G C T A G T C A C G T A C T G A C T G G C A T A G C T G A C T
A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GGTCTGGTTT-
-CTGTGGTTTN
 C A T G A T C G A G C T A G T C A C G T A C T G A C T G G C A T A G C T G A C T A C G T
A C G T G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G