Information for 19-GAGGAGCAGCCAG (Motif 24)

A T C G G T C A A C T G A C T G C T G A A C T G A G T C C G T A A T C G A G T C A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C T G A T G C A C G T A C T G A G T C A G C T A G T C A G T C A C G T A T G C
p-value:1e-6
log p-value:-1.545e+01
Information Content per bp:1.933
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets75.2 +/- 9.5bp
Average Position of motif in Background79.0 +/- 8.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GAGGAGCAGCCAG-
--GGACCACCCACG
 A T C G G T C A A C T G A C T G C T G A A C T G A G T C C G T A A T C G A G T C A G T C C G T A A C T G A C G T
A C G T A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GAGGAGCAGCCAG
-GGGAGGACNG--
 A T C G G T C A A C T G A C T G C T G A A C T G A G T C C G T A A T C G A G T C A G T C C G T A A C T G
A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GAGGAGCAGCCAG
-CGGAGC------
 A T C G G T C A A C T G A C T G C T G A A C T G A G T C C G T A A T C G A G T C A G T C C G T A A C T G
A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GAGGAGCAGCCAG
-----BCAGACWA
 A T C G G T C A A C T G A C T G C T G A A C T G A G T C C G T A A T C G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:5
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GAGGAGCAGCCAG
AAGGKGRCGCAGGCA-
 A C G T A C G T A C G T A T C G G T C A A C T G A C T G C T G A A C T G A G T C C G T A A T C G A G T C A G T C C G T A A C T G
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GAGGAGCAGCCAG
-----CCAGACAG
 A T C G G T C A A C T G A C T G C T G A A C T G A G T C C G T A A T C G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.53
Offset:6
Orientation:forward strand
Alignment:GAGGAGCAGCCAG
------CAGCC--
 A T C G G T C A A C T G A C T G C T G A A C T G A G T C C G T A A T C G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GAGGAGCAGCCAG-------
-----SCAGYCADGCATGAC
 A T C G G T C A A C T G A C T G C T G A A C T G A G T C C G T A A T C G A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:GAGGAGCAGCCAG
-------TGCCAA
 A T C G G T C A A C T G A C T G C T G A A C T G A G T C C G T A A T C G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:GAGGAGCAGCCAG---
------ATGCCAGACN
 A T C G G T C A A C T G A C T G C T G A A C T G A G T C C G T A A T C G A G T C A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C