Information for 6-TGGAGHCTGGCTTAAG (Motif 8)

C G A T A C T G C T A G G C T A C T A G G A T C A G T C A G C T A C T G T A C G G A T C A G C T G A C T G C T A G C T A A C T G
Reverse Opposite:
G T A C C G A T C A G T C T G A C T G A C T A G A G T C G T A C C T G A C T A G C A T G A G T C C G A T G A T C A G T C G C T A
p-value:1e-12
log p-value:-2.764e+01
Information Content per bp:1.696
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.55%
Number of Background Sequences with motif27.8
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets67.4 +/- 21.2bp
Average Position of motif in Background50.3 +/- 23.7bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TGGAGHCTGGCTTAAG
---GGTCTGGCAT---
 C G A T A C T G C T A G G C T A C T A G G A T C A G T C A G C T A C T G T A C G G A T C A G C T G A C T G C T A G C T A A C T G
A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TGGAGHCTGGCTTAAG
NNTNNTGTCTGGNNTNG-
 A C G T A C G T C G A T A C T G C T A G G C T A C T A G G A T C A G T C A G C T A C T G T A C G G A T C A G C T G A C T G C T A G C T A A C T G
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.53
Offset:2
Orientation:forward strand
Alignment:TGGAGHCTGGCTTAAG
--CTGTCTGG------
 C G A T A C T G C T A G G C T A C T A G G A T C A G T C A G C T A C T G T A C G G A T C A G C T G A C T G C T A G C T A A C T G
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TGGAGHCTGGCTTAAG
VBSYGTCTGG------
 C G A T A C T G C T A G G C T A C T A G G A T C A G T C A G C T A C T G T A C G G A T C A G C T G A C T G C T A G C T A A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.52
Offset:2
Orientation:forward strand
Alignment:TGGAGHCTGGCTTAAG
--TWGTCTGV------
 C G A T A C T G C T A G G C T A C T A G G A T C A G T C A G C T A C T G T A C G G A T C A G C T G A C T G C T A G C T A A C T G
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:6
Score:0.52
Offset:2
Orientation:forward strand
Alignment:TGGAGHCTGGCTTAAG
--TTGCCCGGATTAGG
 C G A T A C T G C T A G G C T A C T A G G A T C A G T C A G C T A C T G T A C G G A T C A G C T G A C T G C T A G C T A A C T G
A C G T A C G T C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:TGGAGHCTGGCTTAAG---
----GYCTGGYYTNTGTCA
 C G A T A C T G C T A G G C T A C T A G G A T C A G T C A G C T A C T G T A C G G A T C A G C T G A C T G C T A G C T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:TGGAGHCTGGCTTAAG
------NGGGATTA--
 C G A T A C T G C T A G G C T A C T A G G A T C A G T C A G C T A C T G T A C G G A T C A G C T G A C T G C T A G C T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:9
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:TGGAGHCTGGCTTAAG
-------NGGATTAN-
 C G A T A C T G C T A G G C T A C T A G G A T C A G T C A G C T A C T G T A C G G A T C A G C T G A C T G C T A G C T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:TGGAGHCTGGCTTAAG
TGGACTTTGNNCTNTG
 C G A T A C T G C T A G G C T A C T A G G A T C A G T C A G C T A C T G T A C G G A T C A G C T G A C T G C T A G C T A A C T G
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G