Information for 4-AGTATCTSAGTGCTTA (Motif 7)

C T G A A T C G C A G T C G T A C G A T A G T C A C G T T A G C C G T A A C T G C G A T A C T G G T A C A C G T C G A T T C G A
Reverse Opposite:
A C G T C G T A C G T A A C T G T A G C C G T A T G A C A C G T A T C G G T C A C T A G C G T A C G A T G C T A T A G C A G C T
p-value:1e-14
log p-value:-3.336e+01
Information Content per bp:1.709
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets35.1 +/- 26.8bp
Average Position of motif in Background50.5 +/- 20.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:AGTATCTSAGTGCTTA
-----TTAAGTGCTT-
 C T G A A T C G C A G T C G T A C G A T A G T C A C G T T A G C C G T A A C T G C G A T A C T G G T A C A C G T C G A T T C G A
A C G T A C G T A C G T A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AGTATCTSAGTGCTTA---
--NATTTAAGTACTTANNA
 C T G A A T C G C A G T C G T A C G A T A G T C A C G T T A G C C G T A A C T G C G A T A C T G G T A C A C G T C G A T T C G A A C G T A C G T A C G T
A C G T A C G T T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

PH0116.1_Nkx2-9/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AGTATCTSAGTGCTTA---
--NATTTAAGTACTTNAAA
 C T G A A T C G C A G T C G T A C G A T A G T C A C G T T A G C C G T A A C T G C G A T A C T G G T A C A C G T C G A T T C G A A C G T A C G T A C G T
A C G T A C G T C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A

PH0112.1_Nkx2-3/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AGTATCTSAGTGCTTA---
---CTTTAAGTACTTAATG
 C T G A A T C G C A G T C G T A C G A T A G T C A C G T T A G C C G T A A C T G C G A T A C T G G T A C A C G T C G A T T C G A A C G T A C G T A C G T
A C G T A C G T A C G T G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.58
Offset:5
Orientation:forward strand
Alignment:AGTATCTSAGTGCTTA
-----TTRAGTGSYK-
 C T G A A T C G C A G T C G T A C G A T A G T C A C G T T A G C C G T A A C T G C G A T A C T G G T A C A C G T C G A T T C G A
A C G T A C G T A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T

Sox11/MA0869.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGTATCTSAGTGCTTA
AACAATTTCAGTGTT--
 A C G T C T G A A T C G C A G T C G T A C G A T A G T C A C G T T A G C C G T A A C T G C G A T A C T G G T A C A C G T C G A T T C G A
C G T A C G T A A G T C C G T A C G T A A C G T A G C T C A G T A G T C C G T A A C T G A C G T A C T G A C G T A G C T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGTATCTSAGTGCTTA--
-NTNNTTAAGTGGTTANN
 C T G A A T C G C A G T C G T A C G A T A G T C A C G T T A G C C G T A A C T G C G A T A C T G G T A C A C G T C G A T T C G A A C G T A C G T
A C G T C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

SOX4/MA0867.1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGTATCTSAGTGCTTA
GAACAATTGCAGTGTT--
 A C G T A C G T C T G A A T C G C A G T C G T A C G A T A G T C A C G T T A G C C G T A A C T G C G A T A C T G G T A C A C G T C G A T T C G A
C T A G C G T A C T G A A G T C C T G A C T G A A C G T A C G T C A T G A G T C C T G A A C T G A C G T C T A G A G C T C G A T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:AGTATCTSAGTGCTTA
----CTTGAGTGGCT-
 C T G A A T C G C A G T C G T A C G A T A G T C A C G T T A G C C G T A A C T G C G A T A C T G G T A C A C G T C G A T T C G A
A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:AGTATCTSAGTGCTTA
-----TTGAGTGSTT-
 C T G A A T C G C A G T C G T A C G A T A G T C A C G T T A G C C G T A A C T G C G A T A C T G G T A C A C G T C G A T T C G A
A C G T A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T