Information for 3-GGCTTTTGAAGATTAA (Motif 5)

C A T G A T C G T A G C A G C T C G A T C G A T C A G T C T A G C T G A C T G A A C T G T G C A C G A T G A C T C G T A C T G A
Reverse Opposite:
G A C T A C G T C T G A C G T A A C G T G T A C G A C T G A C T G A T C G C T A G C T A C G T A C T G A A T C G A T G C G A T C
p-value:1e-15
log p-value:-3.510e+01
Information Content per bp:1.657
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.60%
Number of Background Sequences with motif67.4
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets62.9 +/- 23.0bp
Average Position of motif in Background48.6 +/- 34.7bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0015.1_Crx/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GGCTTTTGAAGATTAA---
---CGTTGGGGATTAGCCT
 C A T G A T C G T A G C A G C T C G A T C G A T C A G T C T A G C T G A C T G A A C T G T G C A C G A T G A C T C G T A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

OTX2/MA0712.1/Jaspar

Match Rank:2
Score:0.59
Offset:8
Orientation:reverse strand
Alignment:GGCTTTTGAAGATTAA
--------NGGATTAA
 C A T G A T C G T A G C A G C T C G A T C G A T C A G T C T A G C T G A C T G A A C T G T G C A C G A T G A C T C G T A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:3
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:GGCTTTTGAAGATTAA-
-------VRGGATTARN
 C A T G A T C G T A G C A G C T C G A T C G A T C A G T C T A G C T G A C T G A A C T G T G C A C G A T G A C T C G T A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:4
Score:0.59
Offset:8
Orientation:forward strand
Alignment:GGCTTTTGAAGATTAA
--------RGGATTAR
 C A T G A T C G T A G C A G C T C G A T C G A T C A G T C T A G C T G A C T G A A C T G T G C A C G A T G A C T C G T A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G

TCF7L2/MA0523.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGCTTTTGAAGATTAA
TNCCTTTGATCTTN--
 C A T G A T C G T A G C A G C T C G A T C G A T C A G T C T A G C T G A C T G A A C T G T G C A C G A T G A C T C G T A C T G A
C A G T A G C T A G T C A G T C A G C T A G C T A C G T A T C G C G T A C G A T T A G C G A C T A G C T G A C T A C G T A C G T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:6
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GGCTTTTGAAGATTAA--
-----TTAATGTTTAACC
 C A T G A T C G T A G C A G C T C G A T C G A T C A G T C T A G C T G A C T G A A C T G T G C A C G A T G A C T C G T A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T G A G T C A G C A T T A C G C G A T C A G T G A C T G C T A C G T A G A T C G A T C

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GGCTTTTGAAGATTAA
--CCTTTGAWGT----
 C A T G A T C G T A G C A G C T C G A T C G A T C A G T C T A G C T G A C T G A A C T G T G C A C G A T G A C T C G T A C T G A
A C G T A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T A C G T A C G T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGCTTTTGAAGATTAA
--CCTTTGATGT----
 C A T G A T C G T A G C A G C T C G A T C G A T C A G T C T A G C T G A C T G A A C T G T G C A C G A T G A C T C G T A C T G A
A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GGCTTTTGAAGATTAA
----TTTGAAACCG--
 C A T G A T C G T A G C A G C T C G A T C G A T C A G T C T A G C T G A C T G A A C T G T G C A C G A T G A C T C G T A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:10
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:GGCTTTTGAAGATTAA-
-------GNGGATTAGN
 C A T G A T C G T A G C A G C T C G A T C G A T C A G T C T A G C T G A C T G A A C T G T G C A C G A T G A C T C G T A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G