Information for 11-GTTTCTGGCAGACTGA (Motif 17)

A C T G A G C T A C G T A C G T A T G C A C G T C T A G A C T G A G T C C G T A A C T G C T G A A G T C A C G T A C T G G T C A
Reverse Opposite:
C A G T A G T C G T C A C T A G A G C T G T A C G A C T C T A G G T A C A G T C T C G A A T C G G T C A T C G A C T G A A G T C
p-value:1e-10
log p-value:-2.466e+01
Information Content per bp:1.726
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif7.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets47.6 +/- 22.7bp
Average Position of motif in Background41.6 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:1
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GTTTCTGGCAGACTGA
NAGTTTCABTHTGACTNW
 A C G T A C G T A C T G A G C T A C G T A C G T A T G C A C G T C T A G A C T G A G T C C G T A A C T G C T G A A G T C A C G T A C T G G T C A
A G T C C T G A A T C G A G C T A G C T G A C T A G T C G C T A A C G T C G A T G C A T C G A T A T C G C G T A T A G C G C A T A T G C C G T A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GTTTCTGGCAGACTGA--
----CTGGCAGNCTGCCA
 A C T G A G C T A C G T A C G T A T G C A C G T C T A G A C T G A G T C C G T A A C T G C T G A A G T C A C G T A C T G G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GTTTCTGGCAGACTGA
--AGGTGNCAGACAG-
 A C T G A G C T A C G T A C G T A T G C A C G T C T A G A C T G A G T C C G T A A C T G C T G A A G T C A C G T A C T G G T C A
A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GTTTCTGGCAGACTGA
--AGGTGHCAGACA--
 A C T G A G C T A C G T A C G T A T G C A C G T C T A G A C T G A G T C C G T A A C T G C T G A A G T C A C G T A C T G G T C A
A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:GTTTCTGGCAGACTGA
-------CCAGACAG-
 A C T G A G C T A C G T A C G T A T G C A C G T C T A G A C T G A G T C C G T A A C T G C T G A A G T C A C G T A C T G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

POL002.1_INR/Jaspar

Match Rank:6
Score:0.50
Offset:8
Orientation:reverse strand
Alignment:GTTTCTGGCAGACTGA
--------NNNANTGA
 A C T G A G C T A C G T A C G T A T G C A C G T C T A G A C T G A G T C C G T A A C T G C T G A A G T C A C G T A C T G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:GTTTCTGGCAGACTGA-
-------CCAGACRSVB
 A C T G A G C T A C G T A C G T A T G C A C G T C T A G A C T G A G T C C G T A A C T G C T G A A G T C A C G T A C T G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:8
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:GTTTCTGGCAGACTGA-----
-TTTMCGCTTSABTGAACACN
 A C T G A G C T A C G T A C G T A T G C A C G T C T A G A C T G A G T C C G T A A C T G C T G A A G T C A C G T A C T G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:9
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-GTTTCTGGCAGACTGA
KGTTGCTAGGMAACA--
 A C G T A C T G A G C T A C G T A C G T A T G C A C G T C T A G A C T G A G T C C G T A A C T G C T G A A G T C A C G T A C T G G T C A
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A A C G T A C G T

PB0036.1_Irf6_1/Jaspar

Match Rank:10
Score:0.48
Offset:-6
Orientation:reverse strand
Alignment:------GTTTCTGGCAGACTGA
NNNTTGGTTTCGNTNNN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T A C G T A C G T A T G C A C G T C T A G A C T G A G T C C G T A A C T G C T G A A G T C A C G T A C T G G T C A
G C T A G T A C G C A T A C G T A G C T C T A G A C T G A C G T G C A T A C G T A G T C C T A G C T G A G A C T G A T C G C T A C A T G A C G T A C G T A C G T A C G T A C G T