Information for 3-TTGTYATGCWAAT (Motif 3)

C A G T A C G T C T A G C G A T A G T C G T C A A C G T A C T G G A T C G C A T T C G A C G T A C A G T
Reverse Opposite:
G T C A G C A T A G C T C G T A C T A G G T A C T G C A C A G T T C A G G C T A G A T C G T C A G T C A
p-value:1e-35
log p-value:-8.089e+01
Information Content per bp:1.671
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif4.39%
Number of Background Sequences with motif105.4
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets49.5 +/- 24.5bp
Average Position of motif in Background48.7 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--TTGTYATGCWAAT
CATTGTTATGCAAAT
 A C G T A C G T C A G T A C G T C T A G C G A T A G T C G T C A A C G T A C T G G A T C G C A T T C G A C G T A C A G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--TTGTYATGCWAAT
CTTTGTTATGCAAAT
 A C G T A C G T C A G T A C G T C T A G C G A T A G T C G T C A A C G T A C T G G A T C G C A T T C G A C G T A C A G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.78
Offset:4
Orientation:forward strand
Alignment:TTGTYATGCWAAT---
----TATGCWAATBAV
 C A G T A C G T C T A G C G A T A G T C G T C A A C G T A C T G G A T C G C A T T C G A C G T A C A G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.77
Offset:3
Orientation:reverse strand
Alignment:TTGTYATGCWAAT
---TTATGCAAAT
 C A G T A C G T C T A G C G A T A G T C G T C A A C G T A C T G G A T C G C A T T C G A C G T A C A G T
A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

POU3F1/MA0786.1/Jaspar

Match Rank:5
Score:0.77
Offset:3
Orientation:forward strand
Alignment:TTGTYATGCWAAT--
---TTATGCAAATTA
 C A G T A C G T C T A G C G A T A G T C G T C A A C G T A C T G G A T C G C A T T C G A C G T A C A G T A C G T A C G T
A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

POU3F2/MA0787.1/Jaspar

Match Rank:6
Score:0.76
Offset:3
Orientation:forward strand
Alignment:TTGTYATGCWAAT--
---TTATGCAAATTA
 C A G T A C G T C T A G C G A T A G T C G T C A A C G T A C T G G A T C G C A T T C G A C G T A C A G T A C G T A C G T
A C G T A C G T A C G T C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.76
Offset:1
Orientation:forward strand
Alignment:TTGTYATGCWAAT----
-TTGTATGCAAATTAGA
 C A G T A C G T C T A G C G A T A G T C G T C A A C G T A C T G G A T C G C A T T C G A C G T A C A G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.76
Offset:1
Orientation:forward strand
Alignment:TTGTYATGCWAAT----
-TTGTATGCAAATTAGA
 C A G T A C G T C T A G C G A T A G T C G T C A A C G T A C T G G A T C G C A T T C G A C G T A C A G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.76
Offset:4
Orientation:forward strand
Alignment:TTGTYATGCWAAT---
----WATGCAAATGAG
 C A G T A C G T C T A G C G A T A G T C G T C A A C G T A C T G G A T C G C A T T C G A C G T A C A G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

POU5F1B/MA0792.1/Jaspar

Match Rank:10
Score:0.75
Offset:4
Orientation:forward strand
Alignment:TTGTYATGCWAAT
----TATGCAAAT
 C A G T A C G T C T A G C G A T A G T C G T C A A C G T A C T G G A T C G C A T T C G A C G T A C A G T
A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T