Information for 16-GGCCTAATTA (Motif 20)

C T A G C T A G G T A C A T G C A C G T T C G A C G T A A C G T A G C T C T G A
Reverse Opposite:
G A C T C T G A C G T A A C G T A G C T C G T A A T C G A C T G A G T C A G T C
p-value:1e-10
log p-value:-2.396e+01
Information Content per bp:1.848
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif42.4
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets48.1 +/- 34.5bp
Average Position of motif in Background47.5 +/- 34.4bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:1
Score:0.83
Offset:2
Orientation:reverse strand
Alignment:GGCCTAATTA
--NCTAATTA
 C T A G C T A G G T A C A T G C A C G T T C G A C G T A A C G T A G C T C T G A
A C G T A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A

VSX2/MA0726.1/Jaspar

Match Rank:2
Score:0.83
Offset:3
Orientation:forward strand
Alignment:GGCCTAATTA-
---CTAATTAG
 C T A G C T A G G T A C A T G C A C G T T C G A C G T A A C G T A G C T C T G A A C G T
A C G T A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G

LHX2/MA0700.1/Jaspar

Match Rank:3
Score:0.82
Offset:2
Orientation:forward strand
Alignment:GGCCTAATTA--
--ACTAATTAAC
 C T A G C T A G G T A C A T G C A C G T T C G A C G T A A C G T A G C T C T G A A C G T A C G T
A C G T A C G T T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C

EMX2/MA0886.1/Jaspar

Match Rank:4
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:GGCCTAATTA--
--NCTAATTANN
 C T A G C T A G G T A C A T G C A C G T T C G A C G T A A C G T A G C T C T G A A C G T A C G T
A C G T A C G T T A C G A G T C A C G T G T C A C G T A A C G T C A G T C T G A T A C G A G T C

VSX1/MA0725.1/Jaspar

Match Rank:5
Score:0.81
Offset:3
Orientation:forward strand
Alignment:GGCCTAATTA-
---CTAATTAT
 C T A G C T A G G T A C A T G C A C G T T C G A C G T A A C G T A G C T C T G A A C G T
A C G T A C G T A C G T G A T C G A C T G T C A T C G A G A C T C A G T C T G A A C G T

MEOX1/MA0661.1/Jaspar

Match Rank:6
Score:0.80
Offset:2
Orientation:forward strand
Alignment:GGCCTAATTA--
--GCTAATTAAC
 C T A G C T A G G T A C A T G C A C G T T C G A C G T A A C G T A G C T C T G A A C G T A C G T
A C G T A C G T T C A G T A G C G A C T T G C A C G T A G A C T A C G T C T G A G T C A T A G C

LBX1/MA0618.1/Jaspar

Match Rank:7
Score:0.80
Offset:3
Orientation:reverse strand
Alignment:GGCCTAATTA-
---CTAATTAA
 C T A G C T A G G T A C A T G C A C G T T C G A C G T A A C G T A G C T C T G A A C G T
A C G T A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A

mix-a/MA0621.1/Jaspar

Match Rank:8
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:GGCCTAATTA---
--NCTAATTAANN
 C T A G C T A G G T A C A T G C A C G T T C G A C G T A A C G T A G C T C T G A A C G T A C G T A C G T
A C G T A C G T G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T

NOTO/MA0710.1/Jaspar

Match Rank:9
Score:0.80
Offset:2
Orientation:forward strand
Alignment:GGCCTAATTA--
--GCTAATTAGC
 C T A G C T A G G T A C A T G C A C G T T C G A C G T A A C G T A G C T C T G A A C G T A C G T
A C G T A C G T T A C G G A T C G C A T G T C A C G T A A C G T C A G T C T G A T C A G A T G C

Lhx8/MA0705.1/Jaspar

Match Rank:10
Score:0.80
Offset:3
Orientation:forward strand
Alignment:GGCCTAATTA-
---CTAATTAG
 C T A G C T A G G T A C A T G C A C G T T C G A C G T A A C G T A G C T C T G A A C G T
A C G T A C G T A C G T A G T C A G C T T C G A C G T A A C G T A G C T C T G A T C A G