Information for 15-GAGATAATCC (Motif 18)

C T A G T C G A A C T G T C G A C G A T G C T A C T G A A G C T G T A C G T A C
Reverse Opposite:
C A T G C A T G T C G A G A C T C G A T G C T A A G C T T G A C A G C T A G T C
p-value:1e-10
log p-value:-2.463e+01
Information Content per bp:1.658
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.54%
Number of Background Sequences with motif190.9
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets53.8 +/- 28.8bp
Average Position of motif in Background51.6 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.77
Offset:2
Orientation:forward strand
Alignment:GAGATAATCC
--GCTAATCC
 C T A G T C G A A C T G T C G A C G A T G C T A C T G A A G C T G T A C G T A C
A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C

PH0139.1_Pitx3/Jaspar

Match Rank:2
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--GAGATAATCC----
GNNAGCTAATCCCCCN
 A C G T A C G T C T A G T C G A A C T G T C G A C G A T G C T A C T G A A G C T G T A C G T A C A C G T A C G T A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

Pitx1/MA0682.1/Jaspar

Match Rank:3
Score:0.76
Offset:3
Orientation:forward strand
Alignment:GAGATAATCC-
---TTAATCCC
 C T A G T C G A A C T G T C G A C G A T G C T A C T G A A G C T G T A C G T A C A C G T
A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.76
Offset:2
Orientation:forward strand
Alignment:GAGATAATCC--
--NYTAATCCYB
 C T A G T C G A A C T G T C G A C G A T G C T A C T G A A G C T G T A C G T A C A C G T A C G T
A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

OTX2/MA0712.1/Jaspar

Match Rank:5
Score:0.76
Offset:3
Orientation:forward strand
Alignment:GAGATAATCC-
---TTAATCCT
 C T A G T C G A A C T G T C G A C G A T G C T A C T G A A G C T G T A C G T A C A C G T
A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.76
Offset:2
Orientation:forward strand
Alignment:GAGATAATCC-
--CTTAATCCC
 C T A G T C G A A C T G T C G A C G A T G C T A C T G A A G C T G T A C G T A C A C G T
A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.76
Offset:4
Orientation:forward strand
Alignment:GAGATAATCC--
----TAATCCCN
 C T A G T C G A A C T G T C G A C G A T G C T A C T G A A G C T G T A C G T A C A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

GSC/MA0648.1/Jaspar

Match Rank:8
Score:0.76
Offset:2
Orientation:forward strand
Alignment:GAGATAATCC--
--GCTAATCCCC
 C T A G T C G A A C T G T C G A C G A T G C T A C T G A A G C T G T A C G T A C A C G T A C G T
A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

OTX1/MA0711.1/Jaspar

Match Rank:9
Score:0.75
Offset:3
Orientation:forward strand
Alignment:GAGATAATCC-
---TTAATCCG
 C T A G T C G A A C T G T C G A C G A T G C T A C T G A A G C T G T A C G T A C A C G T
A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G

PH0123.1_Obox3/Jaspar

Match Rank:10
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GAGATAATCC------
ATAGTTAATCCCCCNNA
 A C G T C T A G T C G A A C T G T C G A C G A T G C T A C T G A A G C T G T A C G T A C A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A