Information for 9-TGGAKACTCTTTT (Motif 8)

A C G T A C T G A C T G C G T A C A T G C T G A G T A C A C G T T G A C A C G T A C G T A C G T G A C T
Reverse Opposite:
C T G A C G T A G T C A G T C A A C T G G T C A C A T G G A C T G T A C C G A T A G T C A G T C C G T A
p-value:1e-13
log p-value:-3.109e+01
Information Content per bp:1.719
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.71%
Number of Background Sequences with motif31.4
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets53.5 +/- 31.3bp
Average Position of motif in Background46.5 +/- 35.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEF2C/MA0497.1/Jaspar

Match Rank:1
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TGGAKACTCTTTT------
----TTCTATTTTTAGNNN
 A C G T A C T G A C T G C G T A C A T G C T G A G T A C A C G T T G A C A C G T A C G T A C G T G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:TGGAKACTCTTTT----
-----KCTATTTTTRGH
 A C G T A C T G A C T G C G T A C A T G C T G A G T A C A C G T T G A C A C G T A C G T A C G T G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:TGGAKACTCTTTT---
------CTATTTTTGG
 A C G T A C T G A C T G C G T A C A T G C T G A G T A C A C G T T G A C A C G T A C G T A C G T G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T G T C A C G A T C G A T A G C T G A C T G C A T C T G A C A T G

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:4
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----TGGAKACTCTTTT
CTACTTGGATACGGAAT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A C A T G C T G A G T A C A C G T T G A C A C G T A C G T A C G T G A C T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TGGAKACTCTTTT
GTGGAT--------
 A C G T A C G T A C T G A C T G C G T A C A T G C T G A G T A C A C G T T G A C A C G T A C G T A C G T G A C T
A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:6
Score:0.53
Offset:5
Orientation:forward strand
Alignment:TGGAKACTCTTTT----
-----GCTATTTTTAGC
 A C G T A C T G A C T G C G T A C A T G C T G A G T A C A C G T T G A C A C G T A C G T A C G T G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:7
Score:0.53
Offset:5
Orientation:forward strand
Alignment:TGGAKACTCTTTT----
-----GCTATTTTTGGM
 A C G T A C T G A C T G C G T A C A T G C T G A G T A C A C G T T G A C A C G T A C G T A C G T G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G A G T C G A C T C G T A C G A T G C A T G A C T G C A T C G A T C T A G C A T G T G A C

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:8
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----TGGAKACTCTTTT
ACATCTGGWWTYAATTAR
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A C A T G C T G A G T A C A C G T T G A C A C G T A C G T A C G T G A C T
T G C A G T A C C G T A A C G T T G A C C G A T A C T G A C T G C G A T C G A T G C A T A G C T G C T A C T G A A C G T G A C T G C T A C T G A

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:9
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--TGGAKACTCTTTT
AATGGAAAAT-----
 A C G T A C G T A C G T A C T G A C T G C G T A C A T G C T G A G T A C A C G T T G A C A C G T A C G T A C G T G A C T
T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-TGGAKACTCTTTT
ATGAATATTC----
 A C G T A C G T A C T G A C T G C G T A C A T G C T G A G T A C A C G T T G A C A C G T A C G T A C G T G A C T
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T