Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-277 | -6.386e+02 | 0.0000 | 232.0 | 33.24% | 459.7 | 0.98% | motif file (matrix) |
svg |
2 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-149 | -3.449e+02 | 0.0000 | 349.0 | 50.00% | 4946.7 | 10.50% | motif file (matrix) |
svg |
3 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-123 | -2.838e+02 | 0.0000 | 313.0 | 44.84% | 4724.3 | 10.03% | motif file (matrix) |
svg |
4 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-111 | -2.566e+02 | 0.0000 | 294.0 | 42.12% | 4546.9 | 9.65% | motif file (matrix) |
svg |
5 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-111 | -2.564e+02 | 0.0000 | 222.0 | 31.81% | 2353.7 | 5.00% | motif file (matrix) |
svg |
6 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-78 | -1.814e+02 | 0.0000 | 145.0 | 20.77% | 1312.3 | 2.79% | motif file (matrix) |
svg |
7 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-75 | -1.731e+02 | 0.0000 | 199.0 | 28.51% | 2889.8 | 6.13% | motif file (matrix) |
svg |
8 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-71 | -1.639e+02 | 0.0000 | 161.0 | 23.07% | 1918.5 | 4.07% | motif file (matrix) |
svg |
9 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-62 | -1.438e+02 | 0.0000 | 161.0 | 23.07% | 2223.1 | 4.72% | motif file (matrix) |
svg |
10 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-52 | -1.212e+02 | 0.0000 | 143.0 | 20.49% | 2066.1 | 4.39% | motif file (matrix) |
svg |
11 |
| Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-47 | -1.102e+02 | 0.0000 | 91.0 | 13.04% | 839.1 | 1.78% | motif file (matrix) |
svg |
12 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-45 | -1.038e+02 | 0.0000 | 103.0 | 14.76% | 1207.3 | 2.56% | motif file (matrix) |
svg |
13 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-34 | -7.942e+01 | 0.0000 | 75.0 | 10.74% | 821.6 | 1.74% | motif file (matrix) |
svg |
14 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-32 | -7.407e+01 | 0.0000 | 75.0 | 10.74% | 893.5 | 1.90% | motif file (matrix) |
svg |
15 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-30 | -7.076e+01 | 0.0000 | 80.0 | 11.46% | 1079.3 | 2.29% | motif file (matrix) |
svg |
16 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-29 | -6.838e+01 | 0.0000 | 94.0 | 13.47% | 1546.9 | 3.28% | motif file (matrix) |
svg |
17 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-14 | -3.385e+01 | 0.0000 | 289.0 | 41.40% | 12959.8 | 27.51% | motif file (matrix) |
svg |
18 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-12 | -2.819e+01 | 0.0000 | 71.0 | 10.17% | 1842.2 | 3.91% | motif file (matrix) |
svg |
19 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-11 | -2.736e+01 | 0.0000 | 77.0 | 11.03% | 2131.2 | 4.52% | motif file (matrix) |
svg |
20 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-10 | -2.449e+01 | 0.0000 | 49.0 | 7.02% | 1100.3 | 2.34% | motif file (matrix) |
svg |
21 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-10 | -2.367e+01 | 0.0000 | 147.0 | 21.06% | 5791.3 | 12.29% | motif file (matrix) |
svg |
22 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-9 | -2.262e+01 | 0.0000 | 52.0 | 7.45% | 1282.5 | 2.72% | motif file (matrix) |
svg |
23 |
| Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-7 | -1.828e+01 | 0.0000 | 31.0 | 4.44% | 627.2 | 1.33% | motif file (matrix) |
svg |
24 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-7 | -1.767e+01 | 0.0000 | 90.0 | 12.89% | 3291.5 | 6.99% | motif file (matrix) |
svg |
25 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-6 | -1.475e+01 | 0.0000 | 180.0 | 25.79% | 8563.6 | 18.18% | motif file (matrix) |
svg |
26 |
| Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer | 1e-6 | -1.435e+01 | 0.0000 | 45.0 | 6.45% | 1343.2 | 2.85% | motif file (matrix) |
svg |
27 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-6 | -1.427e+01 | 0.0000 | 123.0 | 17.62% | 5346.8 | 11.35% | motif file (matrix) |
svg |
28 |
| HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer | 1e-6 | -1.425e+01 | 0.0000 | 59.0 | 8.45% | 1997.6 | 4.24% | motif file (matrix) |
svg |
29 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-5 | -1.324e+01 | 0.0000 | 229.0 | 32.81% | 11741.0 | 24.92% | motif file (matrix) |
svg |
30 |
| Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer | 1e-5 | -1.237e+01 | 0.0001 | 68.0 | 9.74% | 2576.4 | 5.47% | motif file (matrix) |
svg |
31 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-4 | -1.128e+01 | 0.0001 | 86.0 | 12.32% | 3621.5 | 7.69% | motif file (matrix) |
svg |
32 |
| Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer | 1e-4 | -9.991e+00 | 0.0005 | 168.0 | 24.07% | 8523.8 | 18.09% | motif file (matrix) |
svg |
33 |
| GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-4 | -9.916e+00 | 0.0005 | 64.0 | 9.17% | 2575.2 | 5.47% | motif file (matrix) |
svg |
34 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-4 | -9.402e+00 | 0.0009 | 60.0 | 8.60% | 2411.7 | 5.12% | motif file (matrix) |
svg |
35 |
| ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-4 | -9.355e+00 | 0.0009 | 69.0 | 9.89% | 2894.8 | 6.15% | motif file (matrix) |
svg |
36 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-3 | -9.175e+00 | 0.0010 | 46.0 | 6.59% | 1710.2 | 3.63% | motif file (matrix) |
svg |
37 |
| Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer | 1e-3 | -9.025e+00 | 0.0012 | 14.0 | 2.01% | 284.2 | 0.60% | motif file (matrix) |
svg |
38 |
| Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer | 1e-3 | -8.361e+00 | 0.0022 | 13.0 | 1.86% | 267.7 | 0.57% | motif file (matrix) |
svg |
39 |
| ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer | 1e-3 | -7.621e+00 | 0.0046 | 53.0 | 7.59% | 2207.4 | 4.69% | motif file (matrix) |
svg |
40 |
| Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-3 | -7.558e+00 | 0.0048 | 230.0 | 32.95% | 12839.8 | 27.26% | motif file (matrix) |
svg |
41 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-3 | -7.356e+00 | 0.0057 | 29.0 | 4.15% | 1002.8 | 2.13% | motif file (matrix) |
svg |
42 |
| PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer | 1e-3 | -7.120e+00 | 0.0070 | 17.0 | 2.44% | 468.5 | 0.99% | motif file (matrix) |
svg |
43 |
| GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-2 | -6.701e+00 | 0.0104 | 42.0 | 6.02% | 1711.3 | 3.63% | motif file (matrix) |
svg |
44 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-2 | -6.573e+00 | 0.0116 | 24.0 | 3.44% | 813.1 | 1.73% | motif file (matrix) |
svg |
45 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-2 | -6.543e+00 | 0.0116 | 32.0 | 4.58% | 1208.9 | 2.57% | motif file (matrix) |
svg |
46 |
| SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.365e+00 | 0.0136 | 48.0 | 6.88% | 2065.8 | 4.39% | motif file (matrix) |
svg |
47 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-2 | -6.298e+00 | 0.0143 | 58.0 | 8.31% | 2623.3 | 5.57% | motif file (matrix) |
svg |
48 |
| EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.275e+00 | 0.0143 | 30.0 | 4.30% | 1128.1 | 2.39% | motif file (matrix) |
svg |
49 |
| TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-2 | -6.255e+00 | 0.0143 | 9.0 | 1.29% | 183.4 | 0.39% | motif file (matrix) |
svg |
50 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-2 | -6.228e+00 | 0.0144 | 66.0 | 9.46% | 3082.9 | 6.54% | motif file (matrix) |
svg |
51 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-2 | -6.224e+00 | 0.0144 | 27.0 | 3.87% | 982.6 | 2.09% | motif file (matrix) |
svg |
52 |
| Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer | 1e-2 | -6.145e+00 | 0.0150 | 15.0 | 2.15% | 427.0 | 0.91% | motif file (matrix) |
svg |
53 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-2 | -6.037e+00 | 0.0164 | 50.0 | 7.16% | 2210.2 | 4.69% | motif file (matrix) |
svg |
54 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-2 | -5.891e+00 | 0.0186 | 44.0 | 6.30% | 1898.3 | 4.03% | motif file (matrix) |
svg |
55 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.720e+00 | 0.0217 | 51.0 | 7.31% | 2302.5 | 4.89% | motif file (matrix) |
svg |
56 |
| CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-2 | -5.623e+00 | 0.0235 | 111.0 | 15.90% | 5830.3 | 12.38% | motif file (matrix) |
svg |
57 |
| Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-2 | -5.589e+00 | 0.0239 | 104.0 | 14.90% | 5413.1 | 11.49% | motif file (matrix) |
svg |
58 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.533e+00 | 0.0248 | 12.0 | 1.72% | 325.5 | 0.69% | motif file (matrix) |
svg |
59 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.478e+00 | 0.0258 | 33.0 | 4.73% | 1350.1 | 2.87% | motif file (matrix) |
svg |
60 |
| Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967) | 1e-2 | -5.477e+00 | 0.0258 | 44.0 | 6.30% | 1943.9 | 4.13% | motif file (matrix) |
svg |
61 |
| CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.422e+00 | 0.0264 | 47.0 | 6.73% | 2115.7 | 4.49% | motif file (matrix) |
svg |
62 |
| Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer | 1e-2 | -5.400e+00 | 0.0265 | 27.0 | 3.87% | 1045.2 | 2.22% | motif file (matrix) |
svg |
63 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-2 | -5.319e+00 | 0.0283 | 30.0 | 4.30% | 1207.1 | 2.56% | motif file (matrix) |
svg |
64 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-2 | -5.147e+00 | 0.0331 | 47.0 | 6.73% | 2148.1 | 4.56% | motif file (matrix) |
svg |
65 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-2 | -4.992e+00 | 0.0380 | 20.0 | 2.87% | 724.4 | 1.54% | motif file (matrix) |
svg |
66 |
| TATA-Box(TBP)/Promoter/Homer | 1e-2 | -4.931e+00 | 0.0398 | 67.0 | 9.60% | 3325.6 | 7.06% | motif file (matrix) |
svg |
67 |
| ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -4.744e+00 | 0.0473 | 21.0 | 3.01% | 793.0 | 1.68% | motif file (matrix) |
svg |
68 |
| MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-2 | -4.615e+00 | 0.0530 | 37.0 | 5.30% | 1655.8 | 3.52% | motif file (matrix) |
svg |