Information for 6-ATGCTAATGA (Motif 4)

G C T A C A G T T C A G T A G C G A C T T C G A C T G A C G A T A C T G T G C A
Reverse Opposite:
A C G T T G A C G C T A G A C T A G C T C T G A A T C G A G T C G T C A C G A T
p-value:1e-24
log p-value:-5.741e+01
Information Content per bp:1.675
Number of Target Sequences with motif87.0
Percentage of Target Sequences with motif12.46%
Number of Background Sequences with motif1559.6
Percentage of Background Sequences with motif3.31%
Average Position of motif in Targets45.5 +/- 26.6bp
Average Position of motif in Background49.3 +/- 32.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-ATGCTAATGA-
WATGCAAATGAG
 A C G T G C T A C A G T T C A G T A G C G A C T T C G A C T G A C G A T A C T G T G C A A C G T
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-ATGCTAATGA-
TATGCWAATBAV
 A C G T G C T A C A G T T C A G T A G C G A C T T C G A C T G A C G A T A C T G T G C A A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU3F2/MA0787.1/Jaspar

Match Rank:3
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--ATGCTAATGA
TTATGCAAATTA
 A C G T A C G T G C T A C A G T T C A G T A G C G A C T T C G A C T G A C G A T A C T G T G C A
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

POU1F1/MA0784.1/Jaspar

Match Rank:4
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---ATGCTAATGA-
AATATGCAAATTAG
 A C G T A C G T A C G T G C T A C A G T T C A G T A G C G A C T T C G A C T G A C G A T A C T G T G C A A C G T
C G T A C G T A C G A T C T G A G A C T C A T G A G T C G C T A C G T A G T C A C G A T A C G T C G T A C T A G

POU3F1/MA0786.1/Jaspar

Match Rank:5
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--ATGCTAATGA
TTATGCAAATTA
 A C G T A C G T G C T A C A G T T C A G T A G C G A C T T C G A C T G A C G A T A C T G T G C A
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

Pou2f3/MA0627.1/Jaspar

Match Rank:6
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----ATGCTAATGA--
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T G C T A C A G T T C A G T A G C G A C T T C G A C T G A C G A T A C T G T G C A A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:7
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----ATGCTAATGA--
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T G C T A C A G T T C A G T A G C G A C T T C G A C T G A C G A T A C T G T G C A A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0144.1_Pou2f2/Jaspar

Match Rank:8
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----ATGCTAATGA--
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T G C T A C A G T T C A G T A G C G A C T T C G A C T G A C G A T A C T G T G C A A C G T A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

POU3F4/MA0789.1/Jaspar

Match Rank:9
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-ATGCTAATGA
TATGCAAAT--
 A C G T G C T A C A G T T C A G T A G C G A C T T C G A C T G A C G A T A C T G T G C A
G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:10
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-ATGCTAATGA
TATGCAAAT--
 A C G T G C T A C A G T T C A G T A G C G A C T T C G A C T G A C G A T A C T G T G C A
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T