Information for 4-CCYCCTGCTGTGA (Motif 3)

G A T C G A T C G A T C A T G C G T A C G A C T A C T G A T G C C G A T A C T G C G A T A C T G G C T A
Reverse Opposite:
C G A T T G A C G C T A G T A C C G T A T A C G G T A C C T G A A C T G A T C G C T A G C T A G C T A G
p-value:1e-40
log p-value:-9.298e+01
Information Content per bp:1.655
Number of Target Sequences with motif67.0
Percentage of Target Sequences with motif9.60%
Number of Background Sequences with motif505.0
Percentage of Background Sequences with motif1.07%
Average Position of motif in Targets48.7 +/- 28.3bp
Average Position of motif in Background50.8 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:CCYCCTGCTGTGA
CCCCCTGCTGTG-
 G A T C G A T C G A T C A T G C G T A C G A C T A C T G A T G C C G A T A C T G C G A T A C T G G C T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.95
Offset:-2
Orientation:forward strand
Alignment:--CCYCCTGCTGTGA
GGCCYCCTGCTGDGH
 A C G T A C G T G A T C G A T C G A T C A T G C G T A C G A C T A C T G A T G C C G A T A C T G C G A T A C T G G C T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.90
Offset:3
Orientation:forward strand
Alignment:CCYCCTGCTGTGA
---CCTGCTGAGH
 G A T C G A T C G A T C A T G C G T A C G A C T A C T G A T G C C G A T A C T G C G A T A C T G G C T A
A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:CCYCCTGCTGTGA--
TCNCCTGCTGNGNNN
 G A T C G A T C G A T C A T G C G T A C G A C T A C T G A T G C C G A T A C T G C G A T A C T G G C T A A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:CCYCCTGCTGTGA--
TNTCCTGCTGTGNNG
 G A T C G A T C G A T C A T G C G T A C G A C T A C T G A T G C C G A T A C T G C G A T A C T G G C T A A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:CCYCCTGCTGTGA--
NNTCCTGCTGTGNNN
 G A T C G A T C G A T C A T G C G T A C G A C T A C T G A T G C C G A T A C T G C G A T A C T G G C T A A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--CCYCCTGCTGTGA
GACCCCCCGCTGTG-
 A C G T A C G T G A T C G A T C G A T C A T G C G T A C G A C T A C T G A T G C C G A T A C T G C G A T A C T G G C T A
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--CCYCCTGCTGTGA
GACCCCCCGCTGCGC
 A C G T A C G T G A T C G A T C G A T C A T G C G T A C G A C T A C T G A T G C C G A T A C T G C G A T A C T G G C T A
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--CCYCCTGCTGTGA
GACCCCCCGCTGTGC
 A C G T A C G T G A T C G A T C G A T C A T G C G T A C G A C T A C T G A T G C C G A T A C T G C G A T A C T G G C T A
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:10
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:CCYCCTGCTGTGA
---CCAGCTGTTN
 G A T C G A T C G A T C A T G C G T A C G A C T A C T G A T G C C G A T A C T G C G A T A C T G G C T A
A C G T A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A