Information for 18-TGGGTCAGTCAGG (Motif 27)

A C G T A C T G A C T G A C T G A C G T A G T C C G T A A C T G A C G T G T A C C T G A A C T G A C T G
Reverse Opposite:
A G T C A G T C A G C T A C T G C G T A A G T C C G A T A C T G C G T A A G T C A G T C G T A C C G T A
p-value:1e-8
log p-value:-2.005e+01
Information Content per bp:1.933
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets74.2 +/- 12.7bp
Average Position of motif in Background38.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TGGGTCAGTCAGG
-AGGTCA------
 A C G T A C T G A C T G A C T G A C G T A G T C C G T A A C T G A C G T G T A C C T G A A C T G A C T G
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TGGGTCAGTCAGG
CGCGCCGGGTCACGTA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A C T G A C G T G T A C C T G A A C T G A C T G
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGGGTCAGTCAGG--
GTAGGTCACTGGGTCA
 A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A C T G A C G T G T A C C T G A A C T G A C T G A C G T A C G T
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TGGGTCAGTCAGG
AAYTAGGTCA------
 A C G T A C G T A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A C T G A C G T G T A C C T G A A C T G A C T G
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TGGGTCAGTCAGG
AGAGCGGGGTCAAGTA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A C T G A C G T G T A C C T G A A C T G A C T G
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------TGGGTCAGTCAGG
TATAAGTAGGTCAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A C T G A C G T G T A C C T G A A C T G A C T G
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

FOS::JUN/MA0099.2/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGGGTCAGTCAGG
TGAGTCA------
 A C G T A C T G A C T G A C T G A C G T A G T C C G T A A C T G A C G T G T A C C T G A A C T G A C T G
G A C T A T C G G C T A A C T G A C G T G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGGGTCAGTCAGG
AGRGGTCA------
 A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A C T G A C G T G T A C C T G A A C T G A C T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

FOSL1/MA0477.1/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TGGGTCAGTCAGG
--GGTGACTCATG
 A C G T A C T G A C T G A C T G A C G T A G T C C G T A A C T G A C G T G T A C C T G A A C T G A C T G
A C G T A C G T C T A G T C A G A C G T A C T G C G T A T A G C A C G T G T A C C G T A A C G T T A C G

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGGGTCAGTCAGG------
NGAGGTCANNGAGTTCANNN
 A C G T A C G T A C T G A C T G A C T G A C G T A G T C C G T A A C T G A C G T G T A C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G