Information for 5-CCCCACTGSRGGSART (Motif 6)

G T A C G T A C A G T C A G T C T C G A A T G C C G A T A C T G T A C G C T G A A C T G A C T G T A G C T G C A C T A G G C A T
Reverse Opposite:
C G T A G A T C A C G T A T C G T G A C T G A C G A C T A T G C G T A C C G T A A T C G A C G T A C T G T C A G C A T G A C T G
p-value:1e-17
log p-value:-4.058e+01
Information Content per bp:1.633
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.73%
Number of Background Sequences with motif157.9
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets46.2 +/- 28.0bp
Average Position of motif in Background49.0 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0102.1_Zic2_1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CCCCACTGSRGGSART
CCCCCCCGGGGGGGT--
 A C G T G T A C G T A C A G T C A G T C T C G A A T G C C G A T A C T G T A C G C T G A A C T G A C T G T A G C T G C A C T A G G C A T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T A C G T A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCCCACTGSRGGSART
CCCCCCCGGGGGGGT--
 A C G T G T A C G T A C A G T C A G T C T C G A A T G C C G A T A C T G T A C G C T G A A C T G A C T G T A G C T G C A C T A G G C A T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T A C G T A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCCCACTGSRGGSART
CCCCCCCGGGGGNN---
 A C G T G T A C G T A C A G T C A G T C T C G A A T G C C G A T A C T G T A C G C T G A A C T G A C T G T A G C T G C A C T A G G C A T
T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCCCACTGSRGGSART
CCACACAGCAGGAGA-
 G T A C G T A C A G T C A G T C T C G A A T G C C G A T A C T G T A C G C T G A A C T G A C T G T A G C T G C A C T A G G C A T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCCCACTGSRGGSART
AATCGCACTGCATTCCG-
 A C G T A C G T G T A C G T A C A G T C A G T C T C G A A T G C C G A T A C T G T A C G C T G A A C T G A C T G T A G C T G C A C T A G G C A T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCCCACTGSRGGSART
CCACACAGCAGGAGA-
 G T A C G T A C A G T C A G T C T C G A A T G C C G A T A C T G T A C G C T G A A C T G A C T G T A G C T G C A C T A G G C A T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CCCCACTGSRGGSART
---CACAGCAGGGGG-
 G T A C G T A C A G T C A G T C T C G A A T G C C G A T A C T G T A C G C T G A A C T G A C T G T A G C T G C A C T A G G C A T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCCCACTGSRGGSART-
--DCHCAGCAGGRGGCC
 G T A C G T A C A G T C A G T C T C G A A T G C C G A T A C T G T A C G C T G A A C T G A C T G T A G C T G C A C T A G G C A T A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCCCACTGSRGGSART
GAGCACAGCAGGACA-
 G T A C G T A C A G T C A G T C T C G A A T G C C G A T A C T G T A C G C T G A A C T G A C T G T A G C T G C A C T A G G C A T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CCCCACTGSRGGSART-
---CACAGCGGGGGGTC
 G T A C G T A C A G T C A G T C T C G A A T G C C G A T A C T G T A C G C T G A A C T G A C T G T A G C T G C A C T A G G C A T A C G T
A C G T A C G T A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C