Information for 10-KYTAATGGGSCAW (Motif 17)

A C T G A G T C A C G T C G T A C G T A A C G T A C T G A C T G A C T G A T G C A G T C C G T A C G A T
Reverse Opposite:
C G T A A C G T A C T G A T C G A G T C A G T C G T A C C G T A A C G T A C G T C G T A C T A G G T A C
p-value:1e-11
log p-value:-2.611e+01
Information Content per bp:1.878
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.2 +/- 12.5bp
Average Position of motif in Background80.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BSX/MA0876.1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:KYTAATGGGSCAW
-NTAATTGG----
 A C T G A G T C A C G T C G T A C G T A A C G T A C T G A C T G A C T G A T G C A G T C C G T A C G A T
A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:KYTAATGGGSCAW
GTTAATGGCC---
 A C T G A G T C A C G T C G T A C G T A A C G T A C T G A C T G A C T G A T G C A G T C C G T A C G A T
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:KYTAATGGGSCAW
-CTAATKGV----
 A C T G A G T C A C G T C G T A C G T A A C G T A C T G A C T G A C T G A T G C A G T C C G T A C G A T
A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:KYTAATGGGSCAW
-NTAATTGN----
 A C T G A G T C A C G T C G T A C G T A A C G T A C T G A C T G A C T G A T G C A G T C C G T A C G A T
A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C A C G T A C G T A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:KYTAATGGGSCAW
GKTAATGR-----
 A C T G A G T C A C G T C G T A C G T A A C G T A C T G A C T G A C T G A T G C A G T C C G T A C G A T
A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T

GSX2/MA0893.1/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:KYTAATGGGSCAW
NTTAATTAGN---
 A C T G A G T C A C G T C G T A C G T A A C G T A C T G A C T G A C T G A T G C A G T C C G T A C G A T
C A G T A G C T C G A T C G T A C G T A G C A T C A G T C T G A T A C G C A G T A C G T A C G T A C G T

GSX1/MA0892.1/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:KYTAATGGGSCAW
NNTAATTAGN---
 A C T G A G T C A C G T C G T A C G T A A C G T A C T G A C T G A C T G A T G C A G T C C G T A C G A T
C G A T A G C T G C A T C G T A C G T A A G C T C A G T C T G A T A C G C A T G A C G T A C G T A C G T

HOXB3/MA0903.1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:KYTAATGGGSCAW
NNTAATTANN---
 A C T G A G T C A C G T C G T A C G T A A C G T A C T G A C T G A C T G A T G C A G T C C G T A C G A T
A C T G A G T C C G A T C T G A C T G A A G C T A C G T C T G A A T C G G A C T A C G T A C G T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:KYTAATGGGSCAW
-CTAATCGNT---
 A C T G A G T C A C G T C G T A C G T A A C G T A C T G A C T G A C T G A T G C A G T C C G T A C G A T
A C G T G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T A C G T A C G T A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:KYTAATGGGSCAW
GCTAATTGCT---
 A C T G A G T C A C G T C G T A C G T A A C G T A C T G A C T G A C T G A T G C A G T C C G T A C G A T
A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T A C G T A C G T A C G T