Information for 18-GTCCATTAGGGTT (Motif 24)

C T A G A C G T A T G C A G T C C G T A A C G T A C G T C G T A A C T G A C T G A T C G A G C T A C G T
Reverse Opposite:
C G T A C T G A A T G C A G T C A G T C A C G T C G T A C G T A A C G T A C T G A T C G C G T A A G T C
p-value:1e-8
log p-value:-2.007e+01
Information Content per bp:1.934
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.5 +/- 17.6bp
Average Position of motif in Background44.8 +/- 15.8bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GTCCATTAGGGTT
-BCMATTAG----
 C T A G A C G T A T G C A G T C C G T A A C G T A C G T C G T A A C T G A C T G A T C G A G C T A C G T
A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GTCCATTAGGGTT
AAAAACCATTAAGG--
 A C G T A C G T A C G T C T A G A C G T A T G C A G T C C G T A A C G T A C G T C G T A A C T G A C T G A T C G A G C T A C G T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GTCCATTAGGGTT
-GCAATTAG----
 C T A G A C G T A T G C A G T C C G T A A C G T A C G T C G T A A C T G A C T G A T C G A G C T A C G T
A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GTCCATTAGGGTT
ACCGATTAG----
 C T A G A C G T A T G C A G T C C G T A A C G T A C G T C G T A A C T G A C T G A T C G A G C T A C G T
C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTCCATTAGGGTT
GGCCATTAAC---
 C T A G A C G T A T G C A G T C C G T A A C G T A C G T C G T A A C T G A C T G A T C G A G C T A C G T
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GTCCATTAGGGTT
---AATTAGTG--
 C T A G A C G T A T G C A G T C C G T A A C G T A C G T C G T A A C T G A C T G A T C G A G C T A C G T
A C G T A C G T A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T A C G T

ZNF143/MA0088.2/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GTCCATTAGGGTT-
CAATGCATTGTGGGTA
 A C G T A C G T C T A G A C G T A T G C A G T C C G T A A C G T A C G T C G T A A C T G A C T G A T C G A G C T A C G T A C G T
G A T C C T G A C T G A C A G T A C T G A G T C G C T A G A C T A G C T T C A G G A C T A C T G A C T G A C T G G C A T T C G A

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GTCCATTAGGGTT
AAACMATTAN----
 A C G T C T A G A C G T A T G C A G T C C G T A A C G T A C G T C G T A A C T G A C T G A T C G A G C T A C G T
T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G A C G T A C G T A C G T A C G T

BSX/MA0876.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GTCCATTAGGGTT
-CCAATTAA----
 C T A G A C G T A T G C A G T C C G T A A C G T A C G T C G T A A C T G A C T G A T C G A G C T A C G T
A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A A C G T A C G T A C G T A C G T

HOXB3/MA0903.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTCCATTAGGGTT
ACTAATTAGC---
 C T A G A C G T A T G C A G T C C G T A A C G T A C G T C G T A A C T G A C T G A T C G A G C T A C G T
C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C A C G T A C G T A C G T