Information for 12-TTTAAGTACTTCAAGM (Motif 14)

A C G T A C G T A C G T C G T A C G T A C T A G C G A T C G T A A G T C A G C T C G A T G T A C C G T A C G T A A T C G G T C A
Reverse Opposite:
C A G T A T G C A C G T A C G T A C T G G C T A C T G A C T A G G A C T C G T A A G T C C G A T C G A T G T C A C G T A C G T A
p-value:1e-11
log p-value:-2.562e+01
Information Content per bp:1.753
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.7 +/- 31.5bp
Average Position of motif in Background56.5 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0116.1_Nkx2-9/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-TTTAAGTACTTCAAGM
TTTTAAGTACTTAAATT
 A C G T A C G T A C G T A C G T C G T A C G T A C T A G C G A T C G T A A G T C A G C T C G A T G T A C C G T A C G T A A T C G G T C A
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

PH0112.1_Nkx2-3/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TTTAAGTACTTCAAGM
CTTTAAGTACTTAATG-
 A C G T A C G T A C G T A C G T C G T A C G T A C T A G C G A T C G T A A G T C A G C T C G A T G T A C C G T A C G T A A T C G G T C A
G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TTTAAGTACTTCAAGM
NATTTAAGTACTTANNA-
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T A G C G A T C G T A A G T C A G C T C G A T G T A C C G T A C G T A A T C G G T C A
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TTTAAGTACTTCAAGM
-TTAAGTGCTT-----
 A C G T A C G T A C G T C G T A C G T A C T A G C G A T C G T A A G T C A G C T C G A T G T A C C G T A C G T A A T C G G T C A
A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T A C G T A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TTTAAGTACTTCAAGM
TTCNAAGTACTTNNNNN
 A C G T A C G T A C G T A C G T C G T A C G T A C T A G C G A T C G T A A G T C A G C T C G A T G T A C C G T A C G T A A T C G G T C A
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

Hoxd9/MA0913.1/Jaspar

Match Rank:6
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-TTTAAGTACTTCAAGM
TTTTTATTGC-------
 A C G T A C G T A C G T A C G T C G T A C G T A C T A G C G A T C G T A A G T C A G C T C G A T G T A C C G T A C G T A A T C G G T C A
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:7
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---TTTAAGTACTTCAAGM
NAATTTTATTACCTNN---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T A G C G A T C G T A A G T C A G C T C G A T G T A C C G T A C G T A A T C G G T C A
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A A C G T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:TTTAAGTACTTCAAGM
TTTAATTGCN------
 A C G T A C G T A C G T C G T A C G T A C T A G C G A T C G T A A G T C A G C T C G A T G T A C C G T A C G T A A T C G G T C A
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----TTTAAGTACTTCAAGM
NGANTTTTATGGCTCN----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T A G C G A T C G T A A G T C A G C T C G A T G T A C C G T A C G T A A T C G G T C A
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T A C G T A C G T A C G T A C G T

ISL2/MA0914.1/Jaspar

Match Rank:10
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:TTTAAGTACTTCAAGM
-TTAAGTGC-------
 A C G T A C G T A C G T C G T A C G T A C T A G C G A T C G T A A G T C A G C T C G A T G T A C C G T A C G T A A T C G G T C A
A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T