Information for 1-ATTTGCATWWCAAAGG (Motif 1)

G C T A G A C T G A C T C G A T T C A G G T A C G C T A C G A T C G T A G C T A A T G C G C T A C G T A C G T A T C A G T C A G
Reverse Opposite:
A G T C A G T C G C A T C G A T C A G T T A C G C G A T G C A T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C G A T
p-value:1e-96
log p-value:-2.213e+02
Information Content per bp:1.605
Number of Target Sequences with motif114.0
Percentage of Target Sequences with motif16.31%
Number of Background Sequences with motif483.1
Percentage of Background Sequences with motif1.02%
Average Position of motif in Targets49.4 +/- 23.4bp
Average Position of motif in Background50.5 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:ATTTGCATWWCAAAGG
ATTTGCATAACAAAG-
 G C T A G A C T G A C T C G A T T C A G G T A C G C T A C G A T C G T A G C T A A T G C G C T A C G T A C G T A T C A G T C A G
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.95
Offset:0
Orientation:forward strand
Alignment:ATTTGCATWWCAAAGG
ATTTGCATAACAATG-
 G C T A G A C T G A C T C G A T T C A G G T A C G C T A C G A T C G T A G C T A A T G C G C T A C G T A C G T A T C A G T C A G
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.75
Offset:0
Orientation:forward strand
Alignment:ATTTGCATWWCAAAGG
ATTTGCATAA------
 G C T A G A C T G A C T C G A T T C A G G T A C G C T A C G A T C G T A G C T A A T G C G C T A C G T A C G T A T C A G T C A G
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:4
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--ATTTGCATWWCAAAGG
TAATTTGCATAA------
 A C G T A C G T G C T A G A C T G A C T C G A T T C A G G T A C G C T A C G A T C G T A G C T A A T G C G C T A C G T A C G T A T C A G T C A G
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:5
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:ATTTGCATWWCAAAGG
ATTTGCATA-------
 G C T A G A C T G A C T C G A T T C A G G T A C G C T A C G A T C G T A G C T A A T G C G C T A C G T A C G T A T C A G T C A G
G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---ATTTGCATWWCAAAGG
TTCATTTGCATAT------
 A C G T A C G T A C G T G C T A G A C T G A C T C G A T T C A G G T A C G C T A C G A T C G T A G C T A A T G C G C T A C G T A C G T A T C A G T C A G
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:7
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-ATTTGCATWWCAAAGG
AATTTGCATANT-----
 A C G T G C T A G A C T G A C T C G A T T C A G G T A C G C T A C G A T C G T A G C T A A T G C G C T A C G T A C G T A T C A G T C A G
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T A C G T A C G T A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:8
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----ATTTGCATWWCAAAGG
TNTAATTTGCATACNA----
 A C G T A C G T A C G T A C G T G C T A G A C T G A C T C G A T T C A G G T A C G C T A C G A T C G T A G C T A A T G C G C T A C G T A C G T A T C A G T C A G
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T A C G T A C G T A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:9
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----ATTTGCATWWCAAAGG
TNTAATTTGCATACNA----
 A C G T A C G T A C G T A C G T G C T A G A C T G A C T C G A T T C A G G T A C G C T A C G A T C G T A G C T A A T G C G C T A C G T A C G T A T C A G T C A G
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T A C G T A C G T A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:10
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--ATTTGCATWWCAAAGG
TAATTTGCATAA------
 A C G T A C G T G C T A G A C T G A C T C G A T T C A G G T A C G C T A C G A T C G T A G C T A A T G C G C T A C G T A C G T A T C A G T C A G
C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T