Information for 5-TGGCCTAATT (Motif 12)

A G C T A C T G A C T G A T G C A G T C G A C T C T G A G T C A A C G T C G A T
Reverse Opposite:
G C T A T G C A C A G T A G C T C T G A C T A G A T C G G T A C G T A C T C G A
p-value:1e-11
log p-value:-2.715e+01
Information Content per bp:1.671
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif6.22%
Number of Background Sequences with motif854.8
Percentage of Background Sequences with motif1.77%
Average Position of motif in Targets45.6 +/- 26.7bp
Average Position of motif in Background49.6 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TGGCCTAATT
TGACCTARTT
 A G C T A C T G A C T G A T G C A G T C G A C T C T G A G T C A A C G T C G A T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TGGCCTAATT---
TTGACCTANTTATN
 A C G T A G C T A C T G A C T G A T G C A G T C G A C T C T G A G T C A A C G T C G A T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TGGCCTAATT
AGGCCTAG--
 A G C T A C T G A C T G A T G C A G T C G A C T C T G A G T C A A C G T C G A T
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T

VSX2/MA0726.1/Jaspar

Match Rank:4
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TGGCCTAATT--
----CTAATTAG
 A G C T A C T G A C T G A T G C A G T C G A C T C T G A G T C A A C G T C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:5
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TGGCCTAATT-
---NCTAATTA
 A G C T A C T G A C T G A T G C A G T C G A C T C T G A G T C A A C G T C G A T A C G T
A C G T A C G T A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A

VSX1/MA0725.1/Jaspar

Match Rank:6
Score:0.64
Offset:4
Orientation:forward strand
Alignment:TGGCCTAATT--
----CTAATTAT
 A G C T A C T G A C T G A T G C A G T C G A C T C T G A G T C A A C G T C G A T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G A C T G T C A T C G A G A C T C A G T C T G A A C G T

LHX2/MA0700.1/Jaspar

Match Rank:7
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TGGCCTAATT---
---ACTAATTAAC
 A G C T A C T G A C T G A T G C A G T C G A C T C T G A G T C A A C G T C G A T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGGCCTAATT
AGGCCTNG--
 A G C T A C T G A C T G A T G C A G T C G A C T C T G A G T C A A C G T C G A T
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T

PH0127.1_Nobox/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGGCCTAATT-------
CGCGCTAATTAGGTATC
 A G C T A C T G A C T G A T G C A G T C G A C T C T G A G T C A A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C A T C G A T G C T C A G A G T C G A C T C T G A C G T A G C A T A G C T C T G A T C A G A C T G G C A T C G T A G A C T A T G C

PH0089.1_Isx/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGGCCTAATT------
ACNNCTAATTAGNNNN
 A G C T A C T G A C T G A T G C A G T C G A C T C T G A G T C A A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T