Information for 16-CCCAAAGCAATGG (Motif 25)

A G T C A G T C A G T C G T C A C G T A C G T A A C T G A G T C C G T A C G T A A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C G T A C G T A C T G G T A C A C G T A C G T C A G T A C T G A C T G C T A G
p-value:1e-7
log p-value:-1.749e+01
Information Content per bp:1.938
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.5 +/- 23.6bp
Average Position of motif in Background49.0 +/- 1.5bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CCCAAAGCAATGG
---VRAACAATGG
 A G T C A G T C A G T C G T C A C G T A C G T A A C T G A G T C C G T A C G T A A C G T A C T G A C T G
A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

SOX9/MA0077.1/Jaspar

Match Rank:2
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CCCAAAGCAATGG
----GAACAATGG
 A G T C A G T C A G T C G T C A C G T A C G T A A C T G A G T C C G T A C G T A A C G T A C T G A C T G
A C G T A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CCCAAAGCAATGG
---AAAACAATGG
 A G T C A G T C A G T C G T C A C G T A C G T A A C T G A G T C C G T A C G T A A C G T A C T G A C T G
A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CCCAAAGCAATGG-
----RAACAATGGN
 A G T C A G T C A G T C G T C A C G T A C G T A A C T G A G T C C G T A C G T A A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CCCAAAGCAATGG
-HNRAATCAAT--
 A G T C A G T C A G T C G T C A C G T A C G T A A C T G A G T C C G T A C G T A A C G T A C T G A C T G
A C G T G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CCCAAAGCAATGG-
----GAACAATGGN
 A G T C A G T C A G T C G T C A C G T A C G T A A C T G A G T C C G T A C G T A A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CCCAAAGCAATGG
-----AACAAAGG
 A G T C A G T C A G T C G T C A C G T A C G T A A C T G A G T C C G T A C G T A A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCCAAAGCAATGG-
CCGCATAGCAACGGA
 A C G T A G T C A G T C A G T C G T C A C G T A C G T A A C T G A G T C C G T A C G T A A C G T A C T G A C T G A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCCAAAGCAATGG-
TACCATAGCAACGGT
 A C G T A G T C A G T C A G T C G T C A C G T A C G T A A C T G A G T C C G T A C G T A A C G T A C T G A C T G A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0121.1_Foxj3_2/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCCAAAGCAATGG-
AACACCAAAACAAAGGA
 A C G T A C G T A C G T A G T C A G T C A G T C G T C A C G T A C G T A A C T G A G T C C G T A C G T A A C G T A C T G A C T G A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A