Information for 6-TGGCAGCAGAGGA (Motif 4)

C A G T A C T G T A C G G T A C C G T A A C T G A G T C C G T A T C A G T C G A C T A G A T C G C G T A
Reverse Opposite:
G C A T A T G C A G T C A G C T A G T C A C G T C T A G A G T C A C G T A C T G A T G C A G T C G T C A
p-value:1e-14
log p-value:-3.353e+01
Information Content per bp:1.801
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif41.5
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets52.2 +/- 21.7bp
Average Position of motif in Background52.8 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGCAGAGGA
TGAGTCAGCA-----
 A C G T A C G T C A G T A C T G T A C G G T A C C G T A A C T G A G T C C G T A T C A G T C G A C T A G A T C G C G T A
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGCAGAGGA
CTTGGCAA-------
 A C G T A C G T C A G T A C T G T A C G G T A C C G T A A C T G A G T C C G T A T C A G T C G A C T A G A T C G C G T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGGCAGCAGAGGA
-GTCAGCANNTN-
 C A G T A C T G T A C G G T A C C G T A A C T G A G T C C G T A T C A G T C G A C T A G A T C G C G T A
A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TGGCAGCAGAGGA
CCACACAGCAGGAGA
 A C G T A C G T C A G T A C T G T A C G G T A C C G T A A C T G A G T C C G T A T C A G T C G A C T A G A T C G C G T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TGGCAGCAGAGGA
-CACAGCAGGGGG
 C A G T A C T G T A C G G T A C C G T A A C T G A G T C C G T A T C A G T C G A C T A G A T C G C G T A
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGGCAGCAGAGGA
-GGGAGGACNG--
 C A G T A C T G T A C G G T A C C G T A A C T G A G T C C G T A T C A G T C G A C T A G A T C G C G T A
A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGCAGAGGA
TNNGGGCAG-------
 A C G T A C G T A C G T C A G T A C T G T A C G G T A C C G T A A C T G A G T C C G T A T C A G T C G A C T A G A T C G C G T A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGGCAGCAGAGGA--
DCHCAGCAGGRGGCC
 C A G T A C T G T A C G G T A C C G T A A C T G A G T C C G T A T C A G T C G A C T A G A T C G C G T A A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGGCAGCAGAGGA
TTGACAGC------
 A C G T C A G T A C T G T A C G G T A C C G T A A C T G A G T C C G T A T C A G T C G A C T A G A T C G C G T A
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGGCAGCAGAGGA
CCACACAGCAGGAGA
 A C G T A C G T C A G T A C T G T A C G G T A C C G T A A C T G A G T C C G T A T C A G T C G A C T A G A T C G C G T A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A