Information for 1-STWWSCCAKGGCWTCC (Motif 2)

A T G C A C G T C G A T C G A T A T C G A G T C A G T C C G T A A C T G A C T G A C T G A G T C G C T A A G C T A G T C A G T C
Reverse Opposite:
A C T G A C T G C T G A C G A T A C T G A G T C A G T C G T A C A C G T A C T G A C T G A T G C C G A T G C T A C G T A A T C G
p-value:1e-13
log p-value:-3.158e+01
Information Content per bp:1.849
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.9 +/- 26.6bp
Average Position of motif in Background34.5 +/- 19.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:STWWSCCAKGGCWTCC
--TTGCCATGGCAACN
 A T G C A C G T C G A T C G A T A T C G A G T C A G T C C G T A A C T G A C T G A C T G A G T C G C T A A G C T A G T C A G T C
A C G T A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:STWWSCCAKGGCWTCC
--TTGCCATGGCAACC
 A T G C A C G T C G A T C G A T A T C G A G T C A G T C C G T A A C T G A C T G A C T G A G T C G C T A A G C T A G T C A G T C
A C G T A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:STWWSCCAKGGCWTCC-
-GTTGCCATGGCAACCG
 A T G C A C G T C G A T C G A T A T C G A G T C A G T C C G T A A C T G A C T G A C T G A G T C G C T A A G C T A G T C A G T C A C G T
A C G T C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:STWWSCCAKGGCWTCC
-GTTGCCATGGCAACM
 A T G C A C G T C G A T C G A T A T C G A G T C A G T C C G T A A C T G A C T G A C T G A G T C G C T A A G C T A G T C A G T C
A C G T C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:STWWSCCAKGGCWTCC
--ATGCCCGGGCATGT
 A T G C A C G T C G A T C G A T A T C G A G T C A G T C C G T A A C T G A C T G A C T G A G T C G C T A A G C T A G T C A G T C
A C G T A C G T G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:STWWSCCAKGGCWTCC
-GTTGCCATGGCAAC-
 A T G C A C G T C G A T C G A T A T C G A G T C A G T C C G T A A C T G A C T G A C T G A G T C G C T A A G C T A G T C A G T C
A C G T C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T

RFX2/MA0600.2/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:STWWSCCAKGGCWTCC
CGTTGCCATGGCAACG
 A T G C A C G T C G A T C G A T A T C G A G T C A G T C C G T A A C T G A C T G A C T G A G T C G C T A A G C T A G T C A G T C
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:STWWSCCAKGGCWTCC
CGTTGCCATGGCAACN
 A T G C A C G T C G A T C G A T A T C G A G T C A G T C C G T A A C T G A C T G A C T G A G T C G C T A A G C T A G T C A G T C
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX5/MA0510.2/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:STWWSCCAKGGCWTCC
CGTTGCCATGGCAACG
 A T G C A C G T C G A T C G A T A T C G A G T C A G T C C G T A A C T G A C T G A C T G A G T C G C T A A G C T A G T C A G T C
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

RFX4/MA0799.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:STWWSCCAKGGCWTCC
CGTTGCCATGGCAACG
 A T G C A C G T C G A T C G A T A T C G A G T C A G T C C G T A A C T G A C T G A C T G A G T C G C T A A G C T A G T C A G T C
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G