Information for 6-SCCACAYRGGGRC (Motif 11)

A T G C G T A C A G T C C G T A A G T C C T G A A G C T C T A G A C T G A C T G A T C G C T G A A G T C
Reverse Opposite:
A C T G A G C T A T G C A G T C A G T C A G T C C T G A A G C T C T A G A C G T A C T G A C T G A T C G
p-value:1e-9
log p-value:-2.176e+01
Information Content per bp:1.859
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif29.7
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets41.9 +/- 18.8bp
Average Position of motif in Background53.5 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:SCCACAYRGGGRC-------
GCCASCAGGGGGCGCYVNNG
 A T G C G T A C A G T C C G T A A G T C C T G A A G C T C T A G A C T G A C T G A T C G C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--SCCACAYRGGGRC----
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A T G C G T A C A G T C C G T A A G T C C T G A A G C T C T A G A C T G A C T G A T C G C T G A A G T C A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

Myc/MA0147.2/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-SCCACAYRGGGRC
AAGCACATGG----
 A C G T A T G C G T A C A G T C C G T A A G T C C T G A A G C T C T A G A C T G A C T G A T C G C T G A A G T C
T C G A C T G A T A C G A G T C C G T A A G T C C T G A A C G T A C T G A C T G A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--SCCACAYRGGGRC-----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A T G C G T A C A G T C C G T A A G T C C T G A A G C T C T A G A C T G A C T G A T C G C T G A A G T C A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-SCCACAYRGGGRC
CCCCCCCGGGGGNN
 A C G T A T G C G T A C A G T C C G T A A G T C C T G A A G C T C T A G A C T G A C T G A T C G C T G A A G T C
T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

SRF/MA0083.3/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--SCCACAYRGGGRC-
TGACCATATATGGTCA
 A C G T A C G T A T G C G T A C A G T C C G T A A G T C C T G A A G C T C T A G A C T G A C T G A T C G C T G A A G T C A C G T
G C A T A C T G G T C A A T G C A G T C C G T A C G A T C T G A A C G T C G T A G C A T T A C G C T A G C A G T T G A C C G T A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---SCCACAYRGGGRC
NWAACCACADNN----
 A C G T A C G T A C G T A T G C G T A C A G T C C G T A A G T C C T G A A G C T C T A G A C T G A C T G A T C G C T G A A G T C
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:SCCACAYRGGGRC
-CCATATATGGNA
 A T G C G T A C A G T C C G T A A G T C C T G A A G C T C T A G A C T G A C T G A T C G C T G A A G T C
A C G T A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A

PB0102.1_Zic2_1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--SCCACAYRGGGRC
ACCCCCCCGGGGGGN
 A C G T A C G T A T G C G T A C A G T C C G T A A G T C C T G A A G C T C T A G A C T G A C T G A T C G C T G A A G T C
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-SCCACAYRGGGRC
NNCCACGTGG----
 A C G T A T G C G T A C A G T C C G T A A G T C C T G A A G C T C T A G A C T G A C T G A T C G C T G A A G T C
T A C G T C G A T A G C A G T C C G T A A G T C C T A G G C A T A C T G A T C G A C G T A C G T A C G T A C G T