Information for 1-MCCTCCGSAG (Motif 1)

G T C A A T G C A T G C G A C T A T G C T G A C C A T G T A G C C T G A C A T G
Reverse Opposite:
G T A C G A C T A T C G G T A C A C T G T A C G C T G A T A C G T A C G C A G T
p-value:1e-15
log p-value:-3.455e+01
Information Content per bp:1.535
Number of Target Sequences with motif79.0
Percentage of Target Sequences with motif8.62%
Number of Background Sequences with motif1513.8
Percentage of Background Sequences with motif3.09%
Average Position of motif in Targets51.4 +/- 27.0bp
Average Position of motif in Background49.2 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HINFP/MA0131.2/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--MCCTCCGSAG
CAACGTCCGCGG
 A C G T A C G T G T C A A T G C A T G C G A C T A T G C T G A C C A T G T A G C C T G A C A T G
A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G

ETV6/MA0645.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-MCCTCCGSAG
CACTTCCGCT-
 A C G T G T C A A T G C A T G C G A C T A T G C T G A C C A T G T A G C C T G A C A T G
G A T C T C G A A G T C G C A T A G C T G T A C G T A C A C T G T A G C A C G T A C G T

ETV5/MA0765.1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-MCCTCCGSAG
NACTTCCGGT-
 A C G T G T C A A T G C A T G C G A C T A T G C T G A C C A T G T A G C C T G A C A T G
G A T C T C G A A G T C C G A T C G A T G T A C G T A C A C T G A T C G G A C T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:MCCTCCGSAG----
--CACAGCAGGGGG
 G T C A A T G C A T G C G A C T A T G C T G A C C A T G T A G C C T G A C A T G A C G T A C G T A C G T A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Gabpa/MA0062.2/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---MCCTCCGSAG
NCCACTTCCGG--
 A C G T A C G T A C G T G T C A A T G C A T G C G A C T A T G C T G A C C A T G T A G C C T G A C A T G
A C T G A G T C A G T C C T G A A G T C C A G T A C G T A G T C G T A C A C T G A T C G A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:MCCTCCGSAG
-GCTCCG---
 G T C A A T G C A T G C G A C T A T G C T G A C C A T G T A G C C T G A C A T G
A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T

ETV4/MA0764.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-MCCTCCGSAG
TACTTCCGGT-
 A C G T G T C A A T G C A T G C G A C T A T G C T G A C C A T G T A G C C T G A C A T G
G A C T T C G A A G T C C G A T G A C T G T A C A T G C A C T G A T C G G A C T A C G T

ETV1/MA0761.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-MCCTCCGSAG
NACTTCCGGT-
 A C G T G T C A A T G C A T G C G A C T A T G C T G A C C A T G T A G C C T G A C A T G
G A C T T C G A A G T C C G A T C G A T G T A C A G T C A C T G A T C G G A C T A C G T

FEV/MA0156.2/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-MCCTCCGSAG
NACTTCCGGT-
 A C G T G T C A A T G C A T G C G A C T A T G C T G A C C A T G T A G C C T G A C A T G
G A T C T C G A A G T C C G A T C G A T G T A C G A T C A C T G A C T G G C A T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--MCCTCCGSAG---
GACCCCCCGCTGTGC
 A C G T A C G T G T C A A T G C A T G C G A C T A T G C T G A C C A T G T A G C C T G A C A T G A C G T A C G T A C G T
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C