Information for 6-GCCCTTGAAC (Motif 20)

A T C G A G T C A G T C A G T C A G C T A C G T A C T G G C T A T G C A A T G C
Reverse Opposite:
A T C G A C G T C G A T A G T C G T C A C T G A A C T G A C T G C T A G A T G C
p-value:1e-7
log p-value:-1.740e+01
Information Content per bp:1.857
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif128.5
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets57.3 +/- 24.0bp
Average Position of motif in Background48.7 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTTGAAC-
TGACCTTGACCT
 A C G T A T C G A G T C A G T C A G T C A G C T A C G T A C T G G C T A T G C A A T G C A C G T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTTGAAC-
TGACCTTGACCT
 A C G T A T C G A G T C A G T C A G T C A G C T A C G T A C T G G C T A T G C A A T G C A C G T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

Nr5a2/MA0505.1/Jaspar

Match Rank:3
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---GCCCTTGAAC--
GCTGACCTTGAACTN
 A C G T A C G T A C G T A T C G A G T C A G T C A G T C A G C T A C G T A C T G G C T A T G C A A T G C A C G T A C G T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTTGAAC
TGACCTTGAN-
 A C G T A T C G A G T C A G T C A G T C A G C T A C G T A C T G G C T A T G C A A T G C
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTTGAAC
TGACCTTGAV-
 A C G T A T C G A G T C A G T C A G T C A G C T A C G T A C T G G C T A T G C A A T G C
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T

Esrra/MA0592.2/Jaspar

Match Rank:6
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GCCCTTGAAC
ATGACCTTGAA-
 A C G T A C G T A T C G A G T C A G T C A G T C A G C T A C G T A C T G G C T A T G C A A T G C
C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---GCCCTTGAAC
BNTGDCCTTG---
 A C G T A C G T A C G T A T C G A G T C A G T C A G T C A G C T A C G T A C T G G C T A T G C A A T G C
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:8
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GCCCTTGAAC----
GAGCCCTTGTCCCTAA
 A C G T A C G T A T C G A G T C A G T C A G T C A G C T A C G T A C T G G C T A T G C A A T G C A C G T A C G T A C G T A C G T
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G

ESRRB/MA0141.3/Jaspar

Match Rank:9
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GCCCTTGAAC
NATGACCTTGA--
 A C G T A C G T A C G T A T C G A G T C A G T C A G T C A G C T A C G T A C T G G C T A T G C A A T G C
C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:10
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GCCCTTGAAC
ATGACCTTGA--
 A C G T A C G T A T C G A G T C A G T C A G T C A G C T A C G T A C T G G C T A T G C A A T G C
C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A A C G T A C G T