Information for 25-RCATTAMTCC (Motif 43)

C T A G T G A C G T C A C G A T G A C T G T C A G T A C A C G T G T A C G T A C
Reverse Opposite:
C A T G C A T G C G T A C A T G C A G T C G T A G C T A A C G T A C T G G A T C
p-value:1e-7
log p-value:-1.755e+01
Information Content per bp:1.627
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.70%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets40.4 +/- 25.7bp
Average Position of motif in Background42.6 +/- 14.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:RCATTAMTCC
TCATCAATCA
 C T A G T G A C G T C A C G A T G A C T G T C A G T A C A C G T G T A C G T A C
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

PH0129.1_Otx1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--RCATTAMTCC-----
NNNAATTAATCCCCNCN
 A C G T A C G T C T A G T G A C G T C A C G A T G A C T G T C A G T A C A C G T G T A C G T A C A C G T A C G T A C G T A C G T A C G T
T C G A C G A T C G T A C G T A C T G A G A C T C G A T C G T A C G T A A C G T G A T C A G T C A T G C A G T C G C A T G T A C G A C T

PH0138.1_Pitx2/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--RCATTAMTCC-----
GNNNATTAATCCCTNCN
 A C G T A C G T C T A G T G A C G T C A C G A T G A C T G T C A G T A C A C G T G T A C G T A C A C G T A C G T A C G T A C G T A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

Dmbx1/MA0883.1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-RCATTAMTCC------
NNNATTAATCCGNTTNA
 A C G T C T A G T G A C G T C A C G A T G A C T G T C A G T A C A C G T G T A C G T A C A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-RCATTAMTCC------
NNNATTAATCCGNTTNA
 A C G T C T A G T G A C G T C A C G A T G A C T G T C A G T A C A C G T G T A C G T A C A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

PH0130.1_Otx2/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--RCATTAMTCC-----
GANNATTAATCCCTNNN
 A C G T A C G T C T A G T G A C G T C A C G A T G A C T G T C A G T A C A C G T G T A C G T A C A C G T A C G T A C G T A C G T A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--RCATTAMTCC
RGCCATYAATCA
 A C G T A C G T C T A G T G A C G T C A C G A T G A C T G T C A G T A C A C G T G T A C G T A C
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

PH0126.1_Obox6/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:RCATTAMTCC------
-CNATAATCCGNTTNT
 C T A G T G A C G T C A C G A T G A C T G T C A G T A C A C G T G T A C G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A G C C T G A G C T A C G A T C G T A C G T A A C G T G T A C A G T C A T C G G A C T C G A T G A C T C G A T C A G T

Hoxa9/MA0594.1/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-RCATTAMTCC
GCCATAAATCA
 A C G T C T A G T G A C G T C A C G A T G A C T G T C A G T A C A C G T G T A C G T A C
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

PH0035.1_Gsc/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--RCATTAMTCC-----
AATCGTTAATCCCTTTA
 A C G T A C G T C T A G T G A C G T C A C G A T G A C T G T C A G T A C A C G T G T A C G T A C A C G T A C G T A C G T A C G T A C G T
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C