Information for 1-CTGTGTAATT (Motif 3)

T G A C C G A T A C T G A C G T A C T G A G C T C G T A C G T A A G C T C A G T
Reverse Opposite:
G C T A T C G A C G A T C G A T C T G A G T A C C G T A A G T C C G T A A C T G
p-value:1e-27
log p-value:-6.382e+01
Information Content per bp:1.772
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif3.24%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets48.3 +/- 31.2bp
Average Position of motif in Background73.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CTGTGTAATT-
NNTGTGGATTSS
 A C G T T G A C C G A T A C T G A C G T A C T G A G C T C G T A C G T A A G C T C A G T A C G T
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G

FOXH1/MA0479.1/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTGTGTAATT--
-TGTGGATTNNN
 T G A C C G A T A C T G A C G T A C T G A G C T C G T A C G T A A G C T C A G T A C G T A C G T
A C G T C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTGTGTAATT
GCTGTG-----
 A C G T T G A C C G A T A C T G A C G T A C T G A G C T C G T A C G T A A G C T C A G T
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CTGTGTAATT---
NCNTTTGTTATTTNN
 A C G T A C G T T G A C C G A T A C T G A C G T A C T G A G C T C G T A C G T A A G C T C A G T A C G T A C G T A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

PH0061.1_Hoxb6/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTGTGTAATT-----
TATTGGTAATTACCTT
 A C G T T G A C C G A T A C T G A C G T A C T G A G C T C G T A C G T A A G C T C A G T A C G T A C G T A C G T A C G T A C G T
G C A T G C T A C A G T C A G T A T C G A C T G A G C T G T C A C G T A C G A T C A G T C T G A G T A C T A G C C A G T A G C T

MF0005.1_Forkhead_class/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CTGTGTAATT
-TGTTTATTT
 T G A C C G A T A C T G A C G T A C T G A G C T C G T A C G T A A G C T C A G T
A C G T G C A T C T A G A G C T G A C T C A G T C T G A A G C T C A G T A G C T

FOXP2/MA0593.1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTGTGTAATT
TNTGTTTACTT
 A C G T T G A C C G A T A C T G A C G T A C T G A G C T C G T A C G T A A G C T C A G T
G A C T A G C T A C G T C T A G A C G T A C G T A C G T C G T A A G T C G C A T G A C T

CEBPA/MA0102.3/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CTGTGTAATT
NATTGTGCAAT-
 A C G T A C G T T G A C C G A T A C T G A C G T A C T G A G C T C G T A C G T A A G C T C A G T
C A G T T C G A A C G T A C G T C T A G A C G T A C T G G T A C C G T A C G T A A G C T A C G T

GSX2/MA0893.1/Jaspar

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CTGTGTAATT---
---NTTAATTAGN
 T G A C C G A T A C T G A C G T A C T G A G C T C G T A C G T A A G C T C A G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A G C T C G A T C G T A C G T A G C A T C A G T C T G A T A C G C A G T

DLX6/MA0882.1/Jaspar

Match Rank:10
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CTGTGTAATT--
----NTAATTGN
 T G A C C G A T A C T G A C G T A C T G A G C T C G T A C G T A A G C T C A G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C G A T T C G A C G T A C A G T C A G T C T A G A T C G