Information for 2-CGGAGVATGCASACAG (Motif 11)

T G A C C T A G A C T G G T C A C T A G T A G C G T C A C A G T A T C G A G T C T C G A A T G C G T C A A T G C C G T A A T C G
Reverse Opposite:
A T G C C G A T A T C G A C G T A T C G A G C T C T A G A T G C G T C A A C G T A T C G A G T C C A G T A G T C A G T C A C T G
p-value:1e-17
log p-value:-3.931e+01
Information Content per bp:1.681
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.21%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets56.1 +/- 24.6bp
Average Position of motif in Background20.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NRF(NRF)/Promoter/Homer

Match Rank:1
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CGGAGVATGCASACAG
--GCGCATGCGCAC--
 T G A C C T A G A C T G G T C A C T A G T A G C G T C A C A G T A T C G A G T C T C G A A T G C G T C A A T G C C G T A A T C G
A C G T A C G T A C T G A G T C A C T G A G T C C G T A A C G T A C T G A G T C A C T G A G T C C T G A T A G C A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.54
Offset:11
Orientation:reverse strand
Alignment:CGGAGVATGCASACAG-
-----------CACAGN
 T G A C C T A G A C T G G T C A C T A G T A G C G T C A C A G T A T C G A G T C T C G A A T G C G T C A A T G C C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CGGAGVATGCASACAG
--GCGCATGCGCAG--
 T G A C C T A G A C T G G T C A C T A G T A G C G T C A C A G T A T C G A G T C T C G A A T G C G T C A A T G C C G T A A T C G
A C G T A C G T T C A G T G A C C T A G T A G C T G C A A C G T T A C G A G T C A C T G A G T C T C G A T A C G A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:4
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CGGAGVATGCASACAG----
----AGCGGCACACACGCAA
 T G A C C T A G A C T G G T C A C T A G T A G C G T C A C A G T A T C G A G T C T C G A A T G C G T C A A T G C C G T A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:CGGAGVATGCASACAG
--------CCAGACAG
 T G A C C T A G A C T G G T C A C T A G T A G C G T C A C A G T A T C G A G T C T C G A A T G C G T C A A T G C C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

NRF1/MA0506.1/Jaspar

Match Rank:6
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CGGAGVATGCASACAG
--GCGCCTGCGCA---
 T G A C C T A G A C T G G T C A C T A G T A G C G T C A C A G T A T C G A G T C T C G A A T G C G T C A A T G C C G T A A T C G
A C G T A C G T T C A G G T A C T C A G A T G C T G A C A C G T A C T G A G T C A T C G G T A C T C G A A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.50
Offset:4
Orientation:forward strand
Alignment:CGGAGVATGCASACAG----
----CGAAGCACACAAAATA
 T G A C C T A G A C T G G T C A C T A G T A G C G T C A C A G T A T C G A G T C T C G A A T G C G T C A A T G C C G T A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.49
Offset:8
Orientation:reverse strand
Alignment:CGGAGVATGCASACAG--
--------CCAGACRSVB
 T G A C C T A G A C T G G T C A C T A G T A G C G T C A C A G T A T C G A G T C T C G A A T G C G T C A A T G C C G T A A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:9
Score:0.49
Offset:5
Orientation:forward strand
Alignment:CGGAGVATGCASACAG-
-----GGTGYTGACAGS
 T G A C C T A G A C T G G T C A C T A G T A G C G T C A C A G T A T C G A G T C T C G A A T G C G T C A A T G C C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:CGGAGVATGCASACAG
CGGAGC----------
 T G A C C T A G A C T G G T C A C T A G T A G C G T C A C A G T A T C G A G T C T C G A A T G C G T C A A T G C C G T A A T C G
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T