Information for 12-CCCCACTTGG (Motif 39)

A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T A C T G A C T G
Reverse Opposite:
G T A C A G T C C G T A C G T A A C T G A C G T T C A G A C T G A C T G A C T G
p-value:1e-8
log p-value:-1.883e+01
Information Content per bp:1.922
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif17.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets67.6 +/- 20.2bp
Average Position of motif in Background55.0 +/- 19.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-3/MA0672.1/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CCCCACTTGG-
-ACCACTTGAA
 A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T A C T G A C T G A C G T
A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

NKX2-8/MA0673.1/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCCCACTTGG-
--CCACTTGAA
 A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T A C T G A C T G A C G T
A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCCCACTTGG--
--CCACGTGGNN
 A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T A C T G A C T G A C G T A C G T
A C G T A C G T T A G C A G T C C G T A A G T C C T A G G C A T A C T G A T C G A G C T A T G C

ZEB1/MA0103.2/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCCCACTTGG
CCTCACCTG-
 A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T A C T G A C T G
T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T

c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCCCACTTGG--
--CCACGTGGNN
 A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T A C T G A C T G A C G T A C G T
A C G T A C G T T A G C A G T C C G T A A G T C C T A G A G C T A C T G A T C G A G T C A G T C

Mycn/MA0104.3/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCCCACTTGG
-GCCACGTG-
 A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T A C T G A C T G
A C G T C T A G A T G C A G T C C G T A A G T C C T A G A C G T A C T G A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CCCCACTTGG
-ACCACTTAA
 A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T A C T G A C T G
A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

PH0089.1_Isx/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCCCACTTGG----
ACNNCTAATTAGNNNN
 A C G T A C G T A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T A C T G A C T G A C G T A C G T A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCCCACTTGG
MRSCACTYAA
 A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T A C T G A C T G
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

PH0111.1_Nkx2-2/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCCCACTTGG-----
ATAACCACTTGAAAATT
 A C G T A C G T A G T C A G T C A G T C A G T C C G T A A G T C A C G T A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T