Information for 10-YCACTYAKGYATG (Motif 24)

A G C T G T A C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A G C T C T G A A C G T A C T G
Reverse Opposite:
A G T C C G T A A G C T C T G A A G T C G T C A A C G T C T A G C G T A A C T G A C G T A C T G C T G A
p-value:1e-9
log p-value:-2.272e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.8 +/- 30.3bp
Average Position of motif in Background28.6 +/- 13.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:YCACTYAKGYATG--
SCAGYCADGCATGAC
 A G C T G T A C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A G C T C T G A A C G T A C T G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----YCACTYAKGYATG
CTTAACCACTTAAGGAT-
 A C G T A C G T A C G T A C G T A C G T A G C T G T A C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A G C T C T G A A C G T A C T G
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----YCACTYAKGYATG
CATAACCACTTAACAAC-
 A C G T A C G T A C G T A C G T A C G T A G C T G T A C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A G C T C T G A A C G T A C T G
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:YCACTYAKGYATG---
GCAGCCAAGCGTGACN
 A G C T G T A C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A G C T C T G A A C G T A C T G A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--YCACTYAKGYATG
AGCCACTCAAG----
 A C G T A C G T A G C T G T A C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A G C T C T G A A C G T A C T G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-YCACTYAKGYATG
ACCACTTAA-----
 A C G T A G C T G T A C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A G C T C T G A A C G T A C T G
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-YCACTYAKGYATG
ACCACTTAA-----
 A C G T A G C T G T A C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A G C T C T G A A C G T A C T G
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T

PAX9/MA0781.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-YCACTYAKGYATG---
TGCAGTCATGCGTGACG
 A C G T A G C T G T A C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A G C T C T G A A C G T A C T G A C G T A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--YCACTYAKGYATG
MRSCACTYAA-----
 A C G T A C G T A G C T G T A C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A G C T C T G A A C G T A C T G
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T A C G T

PAX1/MA0779.1/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-YCACTYAKGYATG---
NGCANTCATGCGTGACG
 A C G T A G C T G T A C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A G C T C T G A A C G T A C T G A C G T A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G