Information for 3-TKHCCATATATGG (Motif 3)

A G C T C A T G G T C A A G T C A G T C C G T A G C A T C G T A C G A T C G T A C G A T C T A G A C T G
Reverse Opposite:
G T A C A G T C G C T A C G A T C G T A C G A T C G T A C G A T C T A G A C T G C A G T G T A C C T G A
p-value:1e-26
log p-value:-5.992e+01
Information Content per bp:1.663
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.00%
Number of Background Sequences with motif63.5
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets57.2 +/- 18.0bp
Average Position of motif in Background42.0 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:1
Score:0.97
Offset:1
Orientation:reverse strand
Alignment:TKHCCATATATGG
-TNCCATATATGG
 A G C T C A T G G T C A A G T C A G T C C G T A G C A T C G T A C G A T C G T A C G A T C T A G A C T G
A C G T C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G

PB0078.1_Srf_1/Jaspar

Match Rank:2
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:TKHCCATATATGG--
-TNCCATATATGGNA
 A G C T C A T G G T C A A G T C A G T C C G T A G C A T C G T A C G A T C G T A C G A T C T A G A C T G A C G T A C G T
A C G T C A G T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A C G A T C T A G C A T G C G T A C G T A

SRF/MA0083.3/Jaspar

Match Rank:3
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:TKHCCATATATGG---
TGNCCATATATGGTCA
 A G C T C A T G G T C A A G T C A G T C C G T A G C A T C G T A C G A T C G T A C G A T C T A G A C T G A C G T A C G T A C G T
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A

MF0008.1_MADS_class/Jaspar

Match Rank:4
Score:0.90
Offset:3
Orientation:reverse strand
Alignment:TKHCCATATATGG
---CCATATATGG
 A G C T C A T G G T C A A G T C A G T C C G T A G C A T C G T A C G A T C G T A C G A T C T A G A C T G
A C G T A C G T A C G T G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.70
Offset:3
Orientation:forward strand
Alignment:TKHCCATATATGG--
---CCTTTTATAGNC
 A G C T C A T G G T C A A G T C A G T C C G T A G C A T C G T A C G A T C G T A C G A T C T A G A C T G A C G T A C G T
A C G T A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TKHCCATATATGG-
--KCCAAAAATAGC
 A G C T C A T G G T C A A G T C A G T C C G T A G C A T C G T A C G A T C G T A C G A T C T A G A C T G A C G T
A C G T A C G T A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C

PB0184.1_Tbp_2/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TKHCCATATATGG----
--CCGATTTAAGCGACC
 A G C T C A T G G T C A A G T C A G T C C G T A G C A T C G T A C G A T C G T A C G A T C T A G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T G A C A T G C A T C G C G T A G A C T C G A T C G A T G T C A G C T A A T C G T A G C A C T G G C T A A C G T G T A C

HLTF/MA0109.1/Jaspar

Match Rank:8
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:TKHCCATATATGG--
-----NNATAAGGNN
 A G C T C A T G G T C A A G T C A G T C C G T A G C A T C G T A C G A T C G T A C G A T C T A G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T

Twist2/MA0633.1/Jaspar

Match Rank:9
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TKHCCATATATGG-
----NACATATGGN
 A G C T C A T G G T C A A G T C A G T C C G T A G C A T C G T A C G A T C G T A C G A T C T A G A C T G A C G T
A C G T A C G T A C G T A C G T G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TKHCCATATATGG
---CCAAAAATAG
 A G C T C A T G G T C A A G T C A G T C C G T A G C A T C G T A C G A T C G T A C G A T C T A G A C T G
A C G T A C G T A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G