Information for 9-CCGAGAGTGCCCC (Motif 9)

A G T C A T G C A C T G C T G A C T A G C G T A A C T G A C G T A C T G A G T C A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G A C T G A G T C C G T A A G T C A C G T A G T C A G C T A G T C A T C G A C T G
p-value:1e-8
log p-value:-1.950e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.2 +/- 19.1bp
Average Position of motif in Background79.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0140.1_Irf6_2/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----CCGAGAGTGCCCC
NNNACCGAGAGTNNN--
 A C G T A C G T A C G T A C G T A G T C A T G C A C T G C T G A C T A G C G T A A C T G A C G T A C T G A G T C A G T C A G T C A G T C
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCGAGAGTGCCCC-----
--GGGTGTGCCCAAAAGG
 A G T C A T G C A C T G C T G A C T A G C G T A A C T G A C G T A C T G A G T C A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

PB0138.1_Irf4_2/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CCGAGAGTGCCCC
GNNACCGAGAATNNN--
 A C G T A C G T A C G T A C G T A G T C A T G C A C T G C T G A C T A G C G T A A C T G A C G T A C T G A G T C A G T C A G T C A G T C
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.62
Offset:6
Orientation:forward strand
Alignment:CCGAGAGTGCCCC--
------ATGCCCACC
 A G T C A T G C A C T G C T G A C T A G C G T A A C T G A C G T A C T G A G T C A G T C A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

PB0099.1_Zfp691_1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCGAGAGTGCCCC----
CGAACAGTGCTCACTAT
 A G T C A T G C A C T G C T G A C T A G C G T A A C T G A C G T A C T G A G T C A G T C A G T C A G T C A C G T A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

Gabpa/MA0062.2/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCGAGAGTGCCCC
CCGGAAGTGGC--
 A G T C A T G C A C T G C T G A C T A G C G T A A C T G A C G T A C T G A G T C A G T C A G T C A G T C
T A G C T G A C A C T G A C T G T C G A G C T A T C A G G A C T T C A G T C A G T G A C A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCGAGAGTGCCCC---
TTGGGGGCGCCCCTAG
 A G T C A T G C A C T G C T G A C T A G C G T A A C T G A C G T A C T G A G T C A G T C A G T C A G T C A C G T A C G T A C G T
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

PB0139.1_Irf5_2/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CCGAGAGTGCCCC
TTGACCGAGAATTCC--
 A C G T A C G T A C G T A C G T A G T C A T G C A C T G C T G A C T A G C G T A A C T G A C G T A C T G A G T C A G T C A G T C A G T C
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCGAGAGTGCCCC
-GGGGATTCCCCC
 A G T C A T G C A C T G C T G A C T A G C G T A A C T G A C G T A C T G A G T C A G T C A G T C A G T C
A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

ELK1/MA0028.2/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCGAGAGTGCCCC
ACCGGAAGTG----
 A C G T A G T C A T G C A C T G C T G A C T A G C G T A A C T G A C G T A C T G A G T C A G T C A G T C A G T C
C T G A T A G C T G A C A C T G A C T G T G C A G C T A T C A G A G C T C T A G A C G T A C G T A C G T A C G T