Information for 3-CACACAACGGCGGCCT (Motif 6)

A G T C C G T A A G T C C G T A A G T C C T G A C T G A A G T C C T A G A C T G A G T C C A T G A C T G A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G A G T C G T A C C T A G A G T C A G T C A C T G A G C T A G C T A C T G A C G T A C T G C G A T A C T G
p-value:1e-10
log p-value:-2.476e+01
Information Content per bp:1.927
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets26.0 +/- 16.6bp
Average Position of motif in Background8.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0168.1_Sox14_2/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CACACAACGGCGGCCT
CTCACACAATGGCGC---
 A C G T A C G T A G T C C G T A A G T C C G T A A G T C C T G A C T G A A G T C C T A G A C T G A G T C C A T G A C T G A G T C A G T C A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CACACAACGGCGGCCT
--CAAGATGGCGGC--
 A G T C C G T A A G T C C G T A A G T C C T G A C T G A A G T C C T A G A C T G A G T C C A T G A C T G A G T C A G T C A C G T
A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CACACAACGGCGGCCT
--CAAGATGGCGGC--
 A G T C C G T A A G T C C G T A A G T C C T G A C T G A A G T C C T A G A C T G A G T C C A T G A C T G A G T C A G T C A C G T
A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CACACAACGGCGGCCT
CGAAGCACACAAAATA-----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A A G T C C T G A C T G A A G T C C T A G A C T G A G T C C A T G A C T G A G T C A G T C A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CACACAACGGCGGCCT
--AACAAAGG------
 A G T C C G T A A G T C C G T A A G T C C T G A C T G A A G T C C T A G A C T G A G T C C A T G A C T G A G T C A G T C A C G T
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.52
Offset:10
Orientation:forward strand
Alignment:CACACAACGGCGGCCT--
----------AGGCCTAG
 A G T C C G T A A G T C C G T A A G T C C T G A C T G A A G T C C T A G A C T G A G T C C A T G A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

Zfx/MA0146.2/Jaspar

Match Rank:7
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CACACAACGGCGGCCT-
---GGGGCCGAGGCCTG
 A G T C C G T A A G T C C G T A A G T C C T G A C T G A A G T C C T A G A C T G A G T C C A T G A C T G A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:8
Score:0.51
Offset:-5
Orientation:reverse strand
Alignment:-----CACACAACGGCGGCCT
ATTTGCATACAATGG------
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A A G T C C T G A C T G A A G T C C T A G A C T G A G T C C A T G A C T G A G T C A G T C A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T

PB0131.1_Gmeb1_2/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CACACAACGGCGGCCT
TNAACGACGTCGNCCA
 A G T C C G T A A G T C C G T A A G T C C T G A C T G A A G T C C T A G A C T G A G T C C A T G A C T G A G T C A G T C A C G T
C G A T C A G T T C G A C T G A G T A C T C A G G C T A T A G C A C T G C A G T A G T C C A T G T G A C A G T C G T A C G T C A

YY2/MA0748.1/Jaspar

Match Rank:10
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:CACACAACGGCGGCCT
----TAATGGCGGNC-
 A G T C C G T A A G T C C G T A A G T C C T G A C T G A A G T C C T A G A C T G A G T C C A T G A C T G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C A C G T