Information for 2-TGCTRATTAG (Motif 13)

A C G T A C T G T A G C A C G T C T G A C G T A A G C T A G C T C G T A T A C G
Reverse Opposite:
A T G C C G A T C T G A C T G A A C G T A G C T C G T A A T C G A G T C C G T A
p-value:1e-11
log p-value:-2.658e+01
Information Content per bp:1.795
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.19%
Number of Background Sequences with motif113.1
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets54.5 +/- 26.6bp
Average Position of motif in Background52.2 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LHX6/MA0658.1/Jaspar

Match Rank:1
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:TGCTRATTAG-
-NCTAATTAGT
 A C G T A C T G T A G C A C G T C T G A C G T A A G C T A G C T C G T A T A C G A C G T
A C G T T C A G A G T C G A C T T C G A T C G A A C G T A G C T T C G A T C A G A G C T

EVX1/MA0887.1/Jaspar

Match Rank:2
Score:0.78
Offset:1
Orientation:forward strand
Alignment:TGCTRATTAG-
-GGTAATTAGC
 A C G T A C T G T A G C A C G T C T G A C G T A A G C T A G C T C G T A T A C G A C G T
A C G T T C A G T A C G G A C T T C G A T C G A A C G T G A C T C T G A A T C G T A G C

EVX2/MA0888.1/Jaspar

Match Rank:3
Score:0.78
Offset:1
Orientation:forward strand
Alignment:TGCTRATTAG-
-GGTAATTAGC
 A C G T A C T G T A G C A C G T C T G A C G T A A G C T A G C T C G T A T A C G A C G T
A C G T T A C G T A C G G A C T T G C A T C G A A C G T A G C T C T G A T A C G A T G C

HOXA2/MA0900.1/Jaspar

Match Rank:4
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:TGCTRATTAG-
-GNTAATTANN
 A C G T A C T G T A G C A C G T C T G A C G T A A G C T A G C T C G T A T A C G A C G T
A C G T A T C G A T C G C G A T C T G A G T C A A G C T A C G T C T G A A T C G A T C G

MEOX1/MA0661.1/Jaspar

Match Rank:5
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:TGCTRATTAG-
-GNTAATTAGN
 A C G T A C T G T A G C A C G T C T G A C G T A A G C T A G C T C G T A T A C G A C G T
A C G T A T C G C A G T G A C T T G C A C T G A G C A T A C G T C T G A A T C G A G T C

PH0097.1_Lhx6_2/Jaspar

Match Rank:6
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---TGCTRATTAG----
NNNCGCTAATTAGNNGA
 A C G T A C G T A C G T A C G T A C T G T A G C A C G T C T G A C G T A A G C T A G C T C G T A T A C G A C G T A C G T A C G T A C G T
T G C A G C T A G A T C G T A C T C A G G A T C G A C T T C G A C T G A A G C T A G C T C T G A C T A G A G C T C A T G A C T G C G T A

EMX2/MA0886.1/Jaspar

Match Rank:7
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:TGCTRATTAG-
-NCTAATTANN
 A C G T A C T G T A G C A C G T C T G A C G T A A G C T A G C T C G T A T A C G A C G T
A C G T T A C G A G T C A C G T G T C A C G T A A C G T C A G T C T G A T A C G A G T C

PH0098.1_Lhx8/Jaspar

Match Rank:8
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---TGCTRATTAG----
CACCGCTAATTAGNNGN
 A C G T A C G T A C G T A C G T A C T G T A G C A C G T C T G A C G T A A G C T A G C T C G T A T A C G A C G T A C G T A C G T A C G T
G A T C T G C A G T A C G T A C T C A G T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A C T G A C T G A C T G C G A T

Lhx8/MA0705.1/Jaspar

Match Rank:9
Score:0.77
Offset:2
Orientation:forward strand
Alignment:TGCTRATTAG
--CTAATTAG
 A C G T A C T G T A G C A C G T C T G A C G T A A G C T A G C T C G T A T A C G
A C G T A C G T A G T C A G C T T C G A C G T A A C G T A G C T C T G A T C A G

PH0032.1_Evx2/Jaspar

Match Rank:10
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---TGCTRATTAG----
CACCGCTAATTAGCGGT
 A C G T A C G T A C G T A C G T A C T G T A G C A C G T C T G A C G T A A G C T A G C T C G T A T A C G A C G T A C G T A C G T A C G T
A G T C T G C A G A T C G T A C T C A G A T G C A G C T T G C A C G T A A C G T A C G T C T G A A T C G A T G C A C T G A C G T G C A T