Information for 4-GTACAGAACA (Motif 3)

C A T G C G A T G C T A G T A C C G T A T A C G T G C A C T G A T A G C C T G A
Reverse Opposite:
G A C T A T C G G A C T A C G T A T G C G C A T C A T G C G A T G C T A G T A C
p-value:1e-32
log p-value:-7.528e+01
Information Content per bp:1.651
Number of Target Sequences with motif174.0
Percentage of Target Sequences with motif22.45%
Number of Background Sequences with motif3826.9
Percentage of Background Sequences with motif8.31%
Average Position of motif in Targets50.7 +/- 25.7bp
Average Position of motif in Background49.8 +/- 33.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0062.1_Sox12_1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTACAGAACA----
NTTNAGAACAATTA
 C A T G C G A T G C T A G T A C C G T A T A C G T G C A C T G A T A G C C T G A A C G T A C G T A C G T A C G T
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

PB0121.1_Foxj3_2/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GTACAGAACA-----
AACACCAAAACAAAGGA
 A C G T A C G T C A T G C G A T G C T A G T A C C G T A T A C G T G C A C T G A T A G C C T G A A C G T A C G T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0074.1_Sox8_1/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTACAGAACA--------
-TNNAGAACAATANATNN
 C A T G C G A T G C T A G T A C C G T A T A C G T G C A C T G A T A G C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GTACAGAACA-
-CCAGGAACAG
 C A T G C G A T G C T A G T A C C G T A T A C G T G C A C T G A T A G C C T G A A C G T
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

PB0063.1_Sox13_1/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GTACAGAACA-------
-TTAAGAACAATAAATT
 C A T G C G A T G C T A G T A C C G T A T A C G T G C A C T G A T A G C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

PB0072.1_Sox5_1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GTACAGAACA-------
-TTTAGAACAATAAAAT
 C A T G C G A T G C T A G T A C C G T A T A C G T G C A C T G A T A G C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GTACAGAACA--
CGAAGCACACAAAATA
 A C G T A C G T A C G T A C G T C A T G C G A T G C T A G T A C C G T A T A C G T G C A C T G A T A G C C T G A A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0065.1_Sox15_1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GTACAGAACA--------
-TAGTGAACAATAGATTT
 C A T G C G A T G C T A G T A C C G T A T A C G T G C A C T G A T A G C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GTACAGAACA--------
---VAGRACAKWCTGTYC
 C A T G C G A T G C T A G T A C C G T A T A C G T G C A C T G A T A G C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

PB0090.1_Zbtb12_1/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GTACAGAACA----
NNGATCTAGAACCTNNN
 A C G T A C G T A C G T C A T G C G A T G C T A G T A C C G T A T A C G T G C A C T G A T A G C C T G A A C G T A C G T A C G T A C G T
T C A G A C G T C T A G C G T A A G C T A G T C A C G T C T G A A C T G G C T A C G T A A G T C T G A C A G C T C G A T G T C A T A C G