Information for 3-CATTTRGTGHTARCAA (Motif 5)

G T A C G T C A C G A T A G C T C G A T C T G A A T C G A G C T C T A G G T A C C A G T C G T A C T G A A G T C G T C A G T C A
Reverse Opposite:
A C G T A C G T T A C G A G C T A C G T G T C A C A T G A G T C C T G A A T G C G A C T G C T A C T G A G C T A A C G T A C T G
p-value:1e-14
log p-value:-3.232e+01
Information Content per bp:1.719
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.6 +/- 23.7bp
Average Position of motif in Background41.9 +/- 16.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CATTTRGTGHTARCAA
----AGGTGTTAAT--
 G T A C G T C A C G A T A G C T C G A T C T G A A T C G A G C T C T A G G T A C C A G T C G T A C T G A A G T C G T C A G T C A
A C G T A C G T A C G T A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:2
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CATTTRGTGHTARCAA----
-----AAAAATAACAAACGG
 G T A C G T C A C G A T A G C T C G A T C T G A A T C G A G C T C T A G G T A C C A G T C G T A C T G A A G T C G T C A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

PB0109.1_Bbx_2/Jaspar

Match Rank:3
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CATTTRGTGHTARCAA---
--NNNNCTGTTAACNNTNN
 G T A C G T C A C G A T A G C T C G A T C T G A A T C G A G C T C T A G G T A C C A G T C G T A C T G A A G T C G T C A G T C A A C G T A C G T A C G T
A C G T A C G T A G T C G A T C T G C A C G T A T A G C A G C T C A T G C A G T A G C T C T G A G T C A G A T C T C G A C T G A C G A T A G T C C T G A

PB0172.1_Sox1_2/Jaspar

Match Rank:4
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:CATTTRGTGHTARCAA------
-------NNNTAACAATTATAN
 G T A C G T C A C G A T A G C T C G A T C T G A A T C G A G C T C T A G G T A C C A G T C G T A C T G A A G T C G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

Sox5/MA0087.1/Jaspar

Match Rank:5
Score:0.50
Offset:10
Orientation:reverse strand
Alignment:CATTTRGTGHTARCAA-
----------NAACAAT
 G T A C G T C A C G A T A G C T C G A T C T G A A T C G A G C T C T A G G T A C C A G T C G T A C T G A A G T C G T C A G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T

SRY/MA0084.1/Jaspar

Match Rank:6
Score:0.50
Offset:8
Orientation:forward strand
Alignment:CATTTRGTGHTARCAA-
--------GTAAACAAT
 G T A C G T C A C G A T A G C T C G A T C T G A A T C G A G C T C T A G G T A C C A G T C G T A C T G A A G T C G T C A G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T

MF0011.1_HMG_class/Jaspar

Match Rank:7
Score:0.50
Offset:11
Orientation:reverse strand
Alignment:CATTTRGTGHTARCAA-
-----------AACAAT
 G T A C G T C A C G A T A G C T C G A T C T G A A T C G A G C T C T A G G T A C C A G T C G T A C T G A A G T C G T C A G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:8
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CATTTRGTGHTARCAA
CCATTGTATGCAAAT--
 A C G T G T A C G T C A C G A T A G C T C G A T C T G A A T C G A G C T C T A G G T A C C A G T C G T A C T G A A G T C G T C A G T C A
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T A C G T A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:9
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:CATTTRGTGHTARCAA-----
-----NNTNANAACAATTNNA
 G T A C G T C A C G A T A G C T C G A T C T G A A T C G A G C T C T A G G T A C C A G T C G T A C T G A A G T C G T C A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

PB0062.1_Sox12_1/Jaspar

Match Rank:10
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:CATTTRGTGHTARCAA---
-----NTTNAGAACAATTA
 G T A C G T C A C G A T A G C T C G A T C T G A A T C G A G C T C T A G G T A C C A G T C G T A C T G A A G T C G T C A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A