Information for 1-NAGGAACACTKTGTKC (Motif 1)

A T C G C T G A T C A G C T A G T C G A T C G A G A T C C G T A T A G C C G A T C A G T C G A T T A C G C A G T A C T G A T G C
Reverse Opposite:
T A C G T G A C G C T A A G T C G C T A G T C A G C T A A T C G C G A T C A T G A G C T A G C T G A T C A G T C G A C T T A G C
p-value:1e-20
log p-value:-4.625e+01
Information Content per bp:1.532
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif19.55%
Number of Background Sequences with motif1234.3
Percentage of Background Sequences with motif2.54%
Average Position of motif in Targets53.2 +/- 21.3bp
Average Position of motif in Background48.5 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:NAGGAACACTKTGTKC-
-NAGAACAGNCTGTNCT
 A T C G C T G A T C A G C T A G T C G A T C G A G A T C C G T A T A G C C G A T C A G T C G A T T A C G C A G T A C T G A T G C A C G T
A C G T T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

NR3C2/MA0727.1/Jaspar

Match Rank:2
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:NAGGAACACTKTGTKC--
-GGGAACATTGTGTTCCC
 A T C G C T G A T C A G C T A G T C G A T C G A G A T C C G T A T A G C C G A T C A G T C G A T T A C G C A G T A C T G A T G C A C G T A C G T
A C G T C A T G T C A G C T A G C G T A C T G A A T G C C T G A G A C T G C A T C T A G G A C T A T C G A C G T G C A T G T A C G A T C G T A C

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:NAGGAACACTKTGTKC--
--AGNACANNNTGTNCTN
 A T C G C T G A T C A G C T A G T C G A T C G A G A T C C G T A T A G C C G A T C A G T C G A T T A C G C A G T A C T G A T G C A C G T A C G T
A C G T A C G T C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

Ar/MA0007.3/Jaspar

Match Rank:4
Score:0.86
Offset:1
Orientation:forward strand
Alignment:NAGGAACACTKTGTKC--
-GGGAACACGGTGTACCC
 A T C G C T G A T C A G C T A G T C G A T C G A G A T C C G T A T A G C C G A T C A G T C G A T T A C G C A G T A C T G A T G C A C G T A C G T
A C G T C T A G C T A G C T A G G C T A G T C A T A G C T C G A A G T C T A C G T C A G G A C T A T C G G C A T C G T A G A T C G A T C G A T C

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:5
Score:0.85
Offset:1
Orientation:forward strand
Alignment:NAGGAACACTKTGTKC
-AAGAACATWHTGTTC
 A T C G C T G A T C A G C T A G T C G A T C G A G A T C C G T A T A G C C G A T C A G T C G A T T A C G C A G T A C T G A T G C
A C G T C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C

NR3C1/MA0113.3/Jaspar

Match Rank:6
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:NAGGAACACTKTGTKC--
-NGGAACATNATGTACCC
 A T C G C T G A T C A G C T A G T C G A T C G A G A T C C G T A T A G C C G A T C A G T C G A T T A C G C A G T A C T G A T G C A C G T A C G T
A C G T C A T G C T A G C T A G C G T A T G C A T A G C C T G A G A C T G C A T C T G A G A C T A T C G G C A T G C T A G A T C G A T C G A T C

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.85
Offset:1
Orientation:forward strand
Alignment:NAGGAACACTKTGTKC
-VAGRACAKWCTGTYC
 A T C G C T G A T C A G C T A G T C G A T C G A G A T C C G T A T A G C C G A T C A G T C G A T T A C G C A G T A C T G A T G C
A C G T T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:8
Score:0.82
Offset:1
Orientation:forward strand
Alignment:NAGGAACACTKTGTKC
-VAGRACAKNCTGTBC
 A T C G C T G A T C A G C T A G T C G A T C G A G A T C C G T A T A G C C G A T C A G T C G A T T A C G C A G T A C T G A T G C
A C G T T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-NAGGAACACTKTGTKC
CCAGGAACAG-------
 A C G T A T C G C T G A T C A G C T A G T C G A T C G A G A T C C G T A T A G C C G A T C A G T C G A T T A C G C A G T A C T G A T G C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:NAGGAACACTKTGTKC
--AGGVNCCTTTGT--
 A T C G C T G A T C A G C T A G T C G A T C G A G A T C C G T A T A G C C G A T C A G T C G A T T A C G C A G T A C T G A T G C
A C G T A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T