Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-65 | -1.499e+02 | 0.0000 | 135.0 | 16.15% | 1196.0 | 2.49% | motif file (matrix) |
svg |
2 |
| Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-55 | -1.271e+02 | 0.0000 | 98.0 | 11.72% | 693.5 | 1.44% | motif file (matrix) |
svg |
3 |
| TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-24 | -5.686e+01 | 0.0000 | 38.0 | 4.55% | 217.6 | 0.45% | motif file (matrix) |
svg |
4 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-21 | -4.872e+01 | 0.0000 | 137.0 | 16.39% | 3221.7 | 6.70% | motif file (matrix) |
svg |
5 |
| Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-19 | -4.595e+01 | 0.0000 | 100.0 | 11.96% | 1998.2 | 4.16% | motif file (matrix) |
svg |
6 |
| Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-19 | -4.427e+01 | 0.0000 | 90.0 | 10.77% | 1715.8 | 3.57% | motif file (matrix) |
svg |
7 |
| Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer | 1e-18 | -4.249e+01 | 0.0000 | 125.0 | 14.95% | 3006.8 | 6.26% | motif file (matrix) |
svg |
8 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-16 | -3.906e+01 | 0.0000 | 172.0 | 20.57% | 5053.2 | 10.51% | motif file (matrix) |
svg |
9 |
| CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer | 1e-16 | -3.688e+01 | 0.0000 | 118.0 | 14.11% | 2964.8 | 6.17% | motif file (matrix) |
svg |
10 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-15 | -3.495e+01 | 0.0000 | 120.0 | 14.35% | 3124.5 | 6.50% | motif file (matrix) |
svg |
11 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-15 | -3.476e+01 | 0.0000 | 121.0 | 14.47% | 3173.0 | 6.60% | motif file (matrix) |
svg |
12 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-14 | -3.351e+01 | 0.0000 | 136.0 | 16.27% | 3835.1 | 7.98% | motif file (matrix) |
svg |
13 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-11 | -2.726e+01 | 0.0000 | 51.0 | 6.10% | 923.7 | 1.92% | motif file (matrix) |
svg |
14 |
| Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer | 1e-10 | -2.464e+01 | 0.0000 | 91.0 | 10.89% | 2453.2 | 5.10% | motif file (matrix) |
svg |
15 |
| HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer | 1e-9 | -2.159e+01 | 0.0000 | 112.0 | 13.40% | 3488.1 | 7.26% | motif file (matrix) |
svg |
16 |
| Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer | 1e-9 | -2.115e+01 | 0.0000 | 65.0 | 7.78% | 1606.6 | 3.34% | motif file (matrix) |
svg |
17 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-8 | -1.914e+01 | 0.0000 | 66.0 | 7.89% | 1731.8 | 3.60% | motif file (matrix) |
svg |
18 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-8 | -1.859e+01 | 0.0000 | 102.0 | 12.20% | 3246.6 | 6.76% | motif file (matrix) |
svg |
19 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-7 | -1.823e+01 | 0.0000 | 88.0 | 10.53% | 2670.5 | 5.56% | motif file (matrix) |
svg |
20 |
| HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer | 1e-7 | -1.808e+01 | 0.0000 | 72.0 | 8.61% | 2019.5 | 4.20% | motif file (matrix) |
svg |
21 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-7 | -1.742e+01 | 0.0000 | 77.0 | 9.21% | 2258.4 | 4.70% | motif file (matrix) |
svg |
22 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-7 | -1.696e+01 | 0.0000 | 90.0 | 10.77% | 2833.3 | 5.90% | motif file (matrix) |
svg |
23 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-7 | -1.682e+01 | 0.0000 | 75.0 | 8.97% | 2209.0 | 4.60% | motif file (matrix) |
svg |
24 |
| HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer | 1e-7 | -1.635e+01 | 0.0000 | 115.0 | 13.76% | 3983.0 | 8.29% | motif file (matrix) |
svg |
25 |
| Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer | 1e-6 | -1.535e+01 | 0.0000 | 98.0 | 11.72% | 3294.6 | 6.86% | motif file (matrix) |
svg |
26 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-6 | -1.533e+01 | 0.0000 | 160.0 | 19.14% | 6194.5 | 12.89% | motif file (matrix) |
svg |
27 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-6 | -1.479e+01 | 0.0000 | 48.0 | 5.74% | 1235.8 | 2.57% | motif file (matrix) |
svg |
28 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-6 | -1.422e+01 | 0.0000 | 239.0 | 28.59% | 10300.2 | 21.43% | motif file (matrix) |
svg |
29 |
| Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer | 1e-6 | -1.411e+01 | 0.0000 | 78.0 | 9.33% | 2502.3 | 5.21% | motif file (matrix) |
svg |
30 |
| Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer | 1e-5 | -1.331e+01 | 0.0000 | 129.0 | 15.43% | 4901.1 | 10.20% | motif file (matrix) |
svg |
31 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-5 | -1.288e+01 | 0.0000 | 68.0 | 8.13% | 2152.4 | 4.48% | motif file (matrix) |
svg |
32 |
| Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer | 1e-5 | -1.281e+01 | 0.0000 | 70.0 | 8.37% | 2243.6 | 4.67% | motif file (matrix) |
svg |
33 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-5 | -1.258e+01 | 0.0000 | 159.0 | 19.02% | 6439.7 | 13.40% | motif file (matrix) |
svg |
34 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-5 | -1.215e+01 | 0.0001 | 11.0 | 1.32% | 110.6 | 0.23% | motif file (matrix) |
svg |
35 |
| Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-5 | -1.206e+01 | 0.0001 | 27.0 | 3.23% | 577.8 | 1.20% | motif file (matrix) |
svg |
36 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-5 | -1.206e+01 | 0.0001 | 32.0 | 3.83% | 753.4 | 1.57% | motif file (matrix) |
svg |
37 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-5 | -1.206e+01 | 0.0001 | 14.0 | 1.67% | 182.0 | 0.38% | motif file (matrix) |
svg |
38 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-4 | -1.145e+01 | 0.0001 | 30.0 | 3.59% | 704.3 | 1.47% | motif file (matrix) |
svg |
39 |
| TATA-Box(TBP)/Promoter/Homer | 1e-4 | -1.131e+01 | 0.0001 | 107.0 | 12.80% | 4049.8 | 8.43% | motif file (matrix) |
svg |
40 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-4 | -1.075e+01 | 0.0002 | 101.0 | 12.08% | 3819.5 | 7.95% | motif file (matrix) |
svg |
41 |
| Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-4 | -1.062e+01 | 0.0002 | 129.0 | 15.43% | 5183.5 | 10.79% | motif file (matrix) |
svg |
42 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-4 | -1.048e+01 | 0.0002 | 274.0 | 32.78% | 12706.8 | 26.44% | motif file (matrix) |
svg |
43 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-4 | -1.015e+01 | 0.0003 | 41.0 | 4.90% | 1187.5 | 2.47% | motif file (matrix) |
svg |
44 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-4 | -1.010e+01 | 0.0003 | 34.0 | 4.07% | 911.8 | 1.90% | motif file (matrix) |
svg |
45 |
| Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967) | 1e-4 | -1.004e+01 | 0.0004 | 52.0 | 6.22% | 1653.7 | 3.44% | motif file (matrix) |
svg |
46 |
| EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer | 1e-4 | -9.866e+00 | 0.0004 | 36.0 | 4.31% | 1001.8 | 2.08% | motif file (matrix) |
svg |
47 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-4 | -9.801e+00 | 0.0004 | 118.0 | 14.11% | 4738.5 | 9.86% | motif file (matrix) |
svg |
48 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-4 | -9.680e+00 | 0.0005 | 40.0 | 4.78% | 1172.3 | 2.44% | motif file (matrix) |
svg |
49 |
| CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-4 | -9.582e+00 | 0.0005 | 167.0 | 19.98% | 7222.2 | 15.03% | motif file (matrix) |
svg |
50 |
| Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer | 1e-4 | -9.499e+00 | 0.0005 | 155.0 | 18.54% | 6622.4 | 13.78% | motif file (matrix) |
svg |
51 |
| ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-4 | -9.431e+00 | 0.0006 | 83.0 | 9.93% | 3098.7 | 6.45% | motif file (matrix) |
svg |
52 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-3 | -8.962e+00 | 0.0009 | 48.0 | 5.74% | 1554.0 | 3.23% | motif file (matrix) |
svg |
53 |
| EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer | 1e-3 | -8.687e+00 | 0.0012 | 48.0 | 5.74% | 1573.0 | 3.27% | motif file (matrix) |
svg |
54 |
| Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer | 1e-3 | -8.592e+00 | 0.0013 | 134.0 | 16.03% | 5683.5 | 11.83% | motif file (matrix) |
svg |
55 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-3 | -8.553e+00 | 0.0013 | 98.0 | 11.72% | 3905.7 | 8.13% | motif file (matrix) |
svg |
56 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-3 | -8.425e+00 | 0.0014 | 44.0 | 5.26% | 1417.8 | 2.95% | motif file (matrix) |
svg |
57 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-3 | -8.395e+00 | 0.0014 | 59.0 | 7.06% | 2083.8 | 4.34% | motif file (matrix) |
svg |
58 |
| JunD(bZIP)/K562-JunD-ChIP-Seq/Homer | 1e-3 | -8.315e+00 | 0.0015 | 10.0 | 1.20% | 142.3 | 0.30% | motif file (matrix) |
svg |
59 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-3 | -8.094e+00 | 0.0019 | 53.0 | 6.34% | 1837.1 | 3.82% | motif file (matrix) |
svg |
60 |
| Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.940e+00 | 0.0022 | 43.0 | 5.14% | 1407.2 | 2.93% | motif file (matrix) |
svg |
61 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.775e+00 | 0.0025 | 17.0 | 2.03% | 375.3 | 0.78% | motif file (matrix) |
svg |
62 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-3 | -7.759e+00 | 0.0025 | 103.0 | 12.32% | 4244.4 | 8.83% | motif file (matrix) |
svg |
63 |
| Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer | 1e-3 | -7.550e+00 | 0.0030 | 11.0 | 1.32% | 186.3 | 0.39% | motif file (matrix) |
svg |
64 |
| RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer | 1e-3 | -7.249e+00 | 0.0040 | 37.0 | 4.43% | 1195.6 | 2.49% | motif file (matrix) |
svg |
65 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-3 | -7.233e+00 | 0.0040 | 42.0 | 5.02% | 1414.7 | 2.94% | motif file (matrix) |
svg |
66 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-3 | -7.170e+00 | 0.0042 | 105.0 | 12.56% | 4419.3 | 9.20% | motif file (matrix) |
svg |
67 |
| AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.162e+00 | 0.0042 | 33.0 | 3.95% | 1030.7 | 2.14% | motif file (matrix) |
svg |
68 |
| Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer | 1e-3 | -7.053e+00 | 0.0046 | 47.0 | 5.62% | 1651.8 | 3.44% | motif file (matrix) |
svg |
69 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-3 | -6.909e+00 | 0.0053 | 36.0 | 4.31% | 1175.1 | 2.45% | motif file (matrix) |
svg |
70 |
| RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer | 1e-2 | -6.844e+00 | 0.0055 | 37.0 | 4.43% | 1223.9 | 2.55% | motif file (matrix) |
svg |
71 |
| Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer | 1e-2 | -6.784e+00 | 0.0058 | 17.0 | 2.03% | 411.2 | 0.86% | motif file (matrix) |
svg |
72 |
| Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-2 | -6.726e+00 | 0.0061 | 28.0 | 3.35% | 847.1 | 1.76% | motif file (matrix) |
svg |
73 |
| NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-2 | -6.672e+00 | 0.0063 | 8.0 | 0.96% | 118.2 | 0.25% | motif file (matrix) |
svg |
74 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-2 | -6.639e+00 | 0.0064 | 21.0 | 2.51% | 569.7 | 1.19% | motif file (matrix) |
svg |
75 |
| AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer | 1e-2 | -6.510e+00 | 0.0072 | 41.0 | 4.90% | 1425.2 | 2.97% | motif file (matrix) |
svg |
76 |
| ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer | 1e-2 | -6.021e+00 | 0.0116 | 52.0 | 6.22% | 1975.0 | 4.11% | motif file (matrix) |
svg |
77 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-2 | -5.657e+00 | 0.0165 | 54.0 | 6.46% | 2106.3 | 4.38% | motif file (matrix) |
svg |
78 |
| EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer | 1e-2 | -5.483e+00 | 0.0194 | 11.0 | 1.32% | 243.6 | 0.51% | motif file (matrix) |
svg |
79 |
| ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-2 | -5.274e+00 | 0.0236 | 62.0 | 7.42% | 2536.5 | 5.28% | motif file (matrix) |
svg |
80 |
| Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer | 1e-2 | -5.263e+00 | 0.0236 | 30.0 | 3.59% | 1031.7 | 2.15% | motif file (matrix) |
svg |
81 |
| PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.188e+00 | 0.0251 | 15.0 | 1.79% | 404.0 | 0.84% | motif file (matrix) |
svg |
82 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-2 | -5.138e+00 | 0.0261 | 38.0 | 4.55% | 1405.8 | 2.93% | motif file (matrix) |
svg |
83 |
| RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer | 1e-2 | -5.077e+00 | 0.0274 | 39.0 | 4.67% | 1457.3 | 3.03% | motif file (matrix) |
svg |
84 |
| Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer | 1e-2 | -4.799e+00 | 0.0357 | 94.0 | 11.24% | 4212.2 | 8.76% | motif file (matrix) |
svg |
85 |
| Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer | 1e-2 | -4.761e+00 | 0.0367 | 19.0 | 2.27% | 589.0 | 1.23% | motif file (matrix) |
svg |
86 |
| ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer | 1e-2 | -4.755e+00 | 0.0367 | 39.0 | 4.67% | 1488.4 | 3.10% | motif file (matrix) |
svg |
87 |
| Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer | 1e-2 | -4.632e+00 | 0.0407 | 17.0 | 2.03% | 512.5 | 1.07% | motif file (matrix) |
svg |