Information for 5-TCCARTTAARKSC (Motif 8)

A C G T A G T C A G T C C G T A C T G A A C G T A C G T C G T A C G T A C T A G A C G T A T C G A G T C
Reverse Opposite:
C T A G A T G C G T C A A G T C A C G T A C G T C G T A C G T A A G C T A C G T C T A G A C T G C G T A
p-value:1e-13
log p-value:-3.092e+01
Information Content per bp:1.875
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.2 +/- 30.2bp
Average Position of motif in Background59.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MSX2/MA0708.1/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:TCCARTTAARKSC
-CCAATTAA----
 A C G T A G T C A G T C C G T A C T G A A C G T A C G T C G T A C G T A C T A G A C G T A T C G A G T C
A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T A C G T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TCCARTTAARKSC
-CTAATTAA----
 A C G T A G T C A G T C C G T A C T G A A C G T A C G T C G T A C G T A C T A G A C G T A T C G A G T C
A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T A C G T A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TCCARTTAARKSC
-CCAATTAA----
 A C G T A G T C A G T C C G T A C T G A A C G T A C G T C G T A C G T A C T A G A C G T A T C G A G T C
A C G T T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T A C G T A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TCCARTTAARKSC
-CCAATTAG----
 A C G T A G T C A G T C C G T A C T G A A C G T A C G T C G T A C G T A C T A G A C G T A T C G A G T C
A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T A C G T A C G T

ALX3/MA0634.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TCCARTTAARKSC
TCTAATTAAA---
 A C G T A G T C A G T C C G T A C T G A A C G T A C G T C G T A C G T A C T A G A C G T A T C G A G T C
G A C T A G T C G A C T C T G A G T C A G C A T G A C T G C T A T C G A T G C A A C G T A C G T A C G T

LBX2/MA0699.1/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TCCARTTAARKSC
GCCAATTAGC---
 A C G T A G T C A G T C C G T A C T G A A C G T A C G T C G T A C G T A C T A G A C G T A T C G A G T C
T C A G A G T C G A T C T G C A T G C A A C G T A C G T C G T A C T A G T A G C A C G T A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----TCCARTTAARKSC
CTTAACCACTTAAGGAT
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C T G A A C G T A C G T C G T A C G T A C T A G A C G T A T C G A G T C
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

ISX/MA0654.1/Jaspar

Match Rank:8
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TCCARTTAARKSC
-CTAATTAA----
 A C G T A G T C A G T C C G T A C T G A A C G T A C G T C G T A C G T A C T A G A C G T A T C G A G T C
A C G T A G T C G A C T G T C A G T C A A C G T A C G T C G T A T C G A A C G T A C G T A C G T A C G T

Shox2/MA0720.1/Jaspar

Match Rank:9
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TCCARTTAARKSC
-CTAATTAA----
 A C G T A G T C A G T C C G T A C T G A A C G T A C G T C G T A C G T A C T A G A C G T A T C G A G T C
A C G T A G T C G A C T G C T A G T C A G C A T C A G T G C T A T C G A A C G T A C G T A C G T A C G T

Nkx2-5/MA0063.1/Jaspar

Match Rank:10
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TCCARTTAARKSC
--CAATTAA----
 A C G T A G T C A G T C C G T A C T G A A C G T A C G T C G T A C G T A C T A G A C G T A T C G A G T C
A C G T A C G T G T A C C G T A G T C A A C G T A C G T C T G A G C T A A C G T A C G T A C G T A C G T